Description Usage Arguments Details See Also Examples
View source: R/addCisEqtl_function.R
addCisEqtl returns an 'mgl' list with the fourteenth element as a list with each element being a dataframe with cis eQTL data from GTEx for a given tissue for the gene of interest.
addCisEqtl(mgl, download = TRUE, saveDownload = FALSE, fpsource = "./")
A logical vector indicating if the data should be downloaded.
A logical vector indicating if the data should be saved as 'RawData_eQTL.RData'
A character string of with the filepath where the data has been downloaded
This gives basic information on tissue specific eQTLs as reported by GTEx for the gene of interest. It pulls eQTL data based on the ENSG identifier. Data is downloaded from GTEx gtexportal.org/.
## Not run: buildFromRegion(chr = 2, start = 102314000, stop = 103435000) -> myMgl ## Not run: myMgl <- addCisEqtl(myMgl, download = TRUE, saveDownload = FALSE)
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