addEnst: Add transcript information to list
In mglR: Master Gene List
Description
Usage
Arguments
See Also
Examples
View source: R/addEnst_function.R
Description
addEnst returns an 'mgl' list with the second element containing information about the trascripts for the gene of interest including external transcript name, ensembl transcript name, and biotype (an Ensembl defined classification of transcript type: e.g. non-coding, protein coding; see http://www.ensembl.org/Help/Faq?id=468)
Usage
1
addEnst(mgl)
Arguments
mgl
List; see buildFromNames, buildFromRegion, or buildFromEnsgs
See Also
Other elements: addAei,
addAntisense, addCisEqtl,
addDnase, addExpression,
addGo, addGrasp,
addGwasCatalog, addLoc,
addPtv, addPubmed,
addSqtlAltrans, addSqtlSeek,
addTransEqtl, missNames
Examples
1
2
## Not run: buildFromRegion(chr = 2, start = 102314000, stop = 103435000) -> myMgl
## Not run: myMgl <- addEnst(myMgl)
mglR documentation built on May 29, 2017, 4:07 p.m.
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Description Usage Arguments See Also Examples
View source: R/addEnst_function.R
Description
addEnst returns an 'mgl' list with the second element containing information about the trascripts for the gene of interest including external transcript name, ensembl transcript name, and biotype (an Ensembl defined classification of transcript type: e.g. non-coding, protein coding; see http://www.ensembl.org/Help/Faq?id=468)
Usage
1 | addEnst(mgl)
|
Arguments
mgl |
List; see |
See Also
Other elements: addAei,
addAntisense, addCisEqtl,
addDnase, addExpression,
addGo, addGrasp,
addGwasCatalog, addLoc,
addPtv, addPubmed,
addSqtlAltrans, addSqtlSeek,
addTransEqtl, missNames
Examples
1 2 | ## Not run: buildFromRegion(chr = 2, start = 102314000, stop = 103435000) -> myMgl
## Not run: myMgl <- addEnst(myMgl)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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