addGrasp: Add GWAS data from GRASP to list
In mglR: Master Gene List
Description
Usage
Arguments
Details
See Also
Examples
View source: R/addGrasp_function.R
Description
addGrasp returns a list with the nineteenth element as dataframe with GWAS data from the GRASP database grasp.nhlbi.nih.gov/.
Usage
1
Arguments
mgl
List; see buildFromNames, buildFromRegion, or buildFromEnsgs
range
Number indicating distance upstream of start and downstream of stop that should be used for filtering SNPs.
Details
This gives basic information on trait associated variants as reported by the GRASP database for the gene of interest. It pulls data based on the position (i.e. any SNP that falls between the start and stop position). Note a wider range can be taken using the range flag.
See Also
Other elements: addAei,
addAntisense, addCisEqtl,
addDnase, addEnst,
addExpression, addGo,
addGwasCatalog, addLoc,
addPtv, addPubmed,
addSqtlAltrans, addSqtlSeek,
addTransEqtl, missNames
Examples
1
2
## Not run: buildFromRegion(chr = 2, start = 102314000, stop = 103435000) -> myMgl
## Not run: myMgl <- addGrasp(myMgl, range = 0)
mglR documentation built on May 29, 2017, 4:07 p.m.
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Description Usage Arguments Details See Also Examples
View source: R/addGrasp_function.R
Description
addGrasp returns a list with the nineteenth element as dataframe with GWAS data from the GRASP database grasp.nhlbi.nih.gov/.
Usage
1 |
Arguments
mgl |
List; see |
range |
Number indicating distance upstream of start and downstream of stop that should be used for filtering SNPs. |
Details
This gives basic information on trait associated variants as reported by the GRASP database for the gene of interest. It pulls data based on the position (i.e. any SNP that falls between the start and stop position). Note a wider range can be taken using the range flag.
See Also
Other elements: addAei,
addAntisense, addCisEqtl,
addDnase, addEnst,
addExpression, addGo,
addGwasCatalog, addLoc,
addPtv, addPubmed,
addSqtlAltrans, addSqtlSeek,
addTransEqtl, missNames
Examples
1 2 | ## Not run: buildFromRegion(chr = 2, start = 102314000, stop = 103435000) -> myMgl
## Not run: myMgl <- addGrasp(myMgl, range = 0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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