mice: Multivariate Imputation by Chained Equations

Share:

Multiple imputation using Fully Conditional Specification (FCS) implemented by the MICE algorithm. Each variable has its own imputation model. Built-in imputation models are provided for continuous data (predictive mean matching, normal), binary data (logistic regression), unordered categorical data (polytomous logistic regression) and ordered categorical data (proportional odds). MICE can also impute continuous two-level data (normal model, pan, second-level variables). Passive imputation can be used to maintain consistency between variables. Various diagnostic plots are available to inspect the quality of the imputations.

Author
Stef van Buuren [aut, cre], Karin Groothuis-Oudshoorn [aut], Alexander Robitzsch [ctb], Gerko Vink [ctb], Lisa Doove [ctb], Shahab Jolani [ctb]
Date of publication
2015-11-09 17:16:02
Maintainer
Stef van Buuren <stef.vanbuuren@tno.nl>
License
GPL-2 | GPL-3
Version
2.25
URLs

View on CRAN

Man pages

appendbreak
Appends specified break to the data
as.mids
Converts an multiply imputed dataset (long format) into a...
as.mira
Create a 'mira' object from repeated analyses
boys
Growth of Dutch boys
bwplot.mids
Box-and-whisker plot of observed and imputed data
cbind.mids
Columnwise combination of a 'mids' object.
cci-methods
Complete case indicator
cc-methods
Complete cases
ccn-methods
Complete cases n
complete
Creates imputed data sets from a 'mids' object
densityplot.mids
Density plot of observed and imputed data
extractBS
Extract broken stick estimates from a 'lmer' object
fdd
SE Fireworks disaster data
fdgs
Fifth Dutch growth study 2009
fico
Fraction of incomplete cases among cases with observed
flux
Influx and outflux of multivariate missing data patterns
fluxplot
Fluxplot of the missing data pattern
getfit
Extracts fit objects from 'mira' object
glm.mids
Generalized linear model for 'mids' object
ibind
Combine imputations fitted to the same data
ici-methods
Incomplete case indicator
ic-methods
Incomplete cases
icn-methods
Incomplete cases n
ifdo
Conditional imputation helper
is.mids
Check for 'mids' object
is.mipo
Check for 'mipo' object
is.mira
Check for 'mira' object
leiden85
Leiden 85+ study
lm.mids
Linear regression for 'mids' object
long2mids
Conversion of a imputed data set (long form) to a 'mids'...
mammalsleep
Mammal sleep data
mdc
Graphical parameter for missing data plots.
md.pairs
Missing data pattern by variable pairs
md.pattern
Missing data pattern
mice
Multivariate Imputation by Chained Equations (MICE)
mice.impute.2l.norm
Imputation by a two-level normal model
mice.impute.2lonly.mean
Imputation of the mean within the class
mice.impute.2lonly.norm
Imputation at level 2 by Bayesian linear regression
mice.impute.2lonly.pmm
Imputation at level 2 by predictive mean matching
mice.impute.2l.pan
Imputation by a two-level normal model using 'pan'
mice.impute.cart
Imputation by classification and regression trees
mice.impute.fastpmm
Imputation by fast predictive mean matching
mice.impute.lda
Imputation by linear discriminant analysis
mice.impute.logreg
Imputation by logistic regression
mice.impute.logreg.boot
Imputation by logistic regression using the bootstrap
mice.impute.mean
Imputation by the mean
mice.impute.norm
Imputation by Bayesian linear regression
mice.impute.norm.boot
Imputation by linear regression, bootstrap method
mice.impute.norm.nob
Imputation by linear regression (non Bayesian)
mice.impute.norm.predict
Imputation by linear regression, prediction method
mice.impute.passive
Passive imputation
mice.impute.pmm
Imputation by predictive mean matching
mice.impute.polr
Imputation by polytomous regression - ordered
mice.impute.polyreg
Imputation by polytomous regression - unordered
mice.impute.quadratic
Imputation of quadratric terms
mice.impute.rf
Imputation by random forests
mice.impute.ri
Imputation by the random indicator method for nonignorable...
mice.impute.sample
Imputation by simple random sampling
mice.mids
Multivariate Imputation by Chained Equations (Iteration Step)
mice.theme
Set the theme for the plotting Trellis functions
mids2mplus
Export 'mids' object to Mplus
mids2spss
Export 'mids' object to SPSS
mids-class
Multiply imputed data set ('mids')
mipo-class
Multiply imputed pooled analysis ('mipo')
mira-class
Multiply imputed repeated analyses ('mira')
nelsonaalen
Cumulative hazard rate or Nelson-Aalen estimator
nhanes
NHANES example - all variables numerical
nhanes2
NHANES example - mixed numerical and discrete variables
norm.draw
Draws values of beta and sigma by Bayesian linear regression
pattern
Datasets with various missing data patterns
plot.mids
Plot the trace lines of the MICE algorithm
pool
Multiple imputation pooling
pool.compare
Compare two nested models fitted to imputed data
pool.r.squared
Pooling: R squared
pool.scalar
Multiple imputation pooling: univariate version
popmis
Hox pupil popularity data with missing popularity scores
pops
Project on preterm and small for gestational age infants...
potthoffroy
Potthoff-Roy data
print
Print a 'mids' object
quickpred
Quick selection of predictors from the data
rbind.mids
Rowwise combination of a 'mids' object.
selfreport
Self-reported and measured BMI
squeeze
Squeeze the imputed values to be within specified boundaries.
stripplot.mids
Stripplot of observed and imputed data
summary
Summary of a 'mira' object
supports.transparent
Supports semi-transparent foreground colors?
tbc
Terneuzen birth cohort
version
Echoes the package version number
walking
Walking disability data
windspeed
Subset of Irish wind speed data
with.mids
Evaluate an expression in multiple imputed datasets
xyplot.mids
Scatterplot of observed and imputed data

Files in this package

mice
mice/inst
mice/inst/CITATION
mice/inst/NEWS
mice/inst/doc
mice/inst/doc/fimd4.r
mice/inst/doc/fimd9.r
mice/inst/doc/fimd5.r
mice/inst/doc/fimd7.r
mice/inst/doc/JSScode.R
mice/inst/doc/fimd1.r
mice/inst/doc/fimd6.r
mice/inst/doc/fimd8.r
mice/inst/doc/fimd2.r
mice/inst/doc/fimd3.r
mice/src
mice/src/Makevars
mice/src/match.cpp
mice/src/Makevars.win
mice/src/RcppExports.cpp
mice/NAMESPACE
mice/data
mice/data/selfreport.rda
mice/data/mammalsleep.rda
mice/data/nhanes2.rda
mice/data/nhanes.rda
mice/data/fdd.rda
mice/data/potthoffroy.rda
mice/data/walking.rda
mice/data/tbc.target.rda
mice/data/windspeed.rda
mice/data/leiden85.rda
mice/data/boys.rda
mice/data/pattern2.rda
mice/data/fdd.pred.rda
mice/data/pattern4.rda
mice/data/fdgs.rda
mice/data/popmis.rda
mice/data/pattern3.rda
mice/data/tbc.rda
mice/data/pops.rda
mice/data/pops.pred.rda
mice/data/pattern1.rda
mice/R
mice/R/mids.r
mice/R/pool.compare.r
mice/R/df.residual.r
mice/R/supports.transparent.r
mice/R/mice.impute.polr.r
mice/R/mdc.r
mice/R/lm.r
mice/R/complete.r
mice/R/mice.impute.mean.r
mice/R/stripplot.r
mice/R/mids2mplus.r
mice/R/cci.r
mice/R/mice.impute.passive.r
mice/R/plot.r
mice/R/mice.impute.cart.r
mice/R/windspeed.r
mice/R/md.pairs.r
mice/R/flux.r
mice/R/long2mids.r
mice/R/ccn.r
mice/R/tbc.r
mice/R/print.r
mice/R/mice.impute.2lonly.norm.r
mice/R/mice.impute.quadratic.r
mice/R/potthoffroy.r
mice/R/mice.impute.polyreg.r
mice/R/boys.r
mice/R/mice.theme.r
mice/R/squeeze.r
mice/R/mice.impute.fastpmm.r
mice/R/mice.impute.logreg.r
mice/R/walking.r
mice/R/mice.impute.rf.r
mice/R/ibind.r
mice/R/RcppExports.r
mice/R/nhanes.r
mice/R/fdgs.r
mice/R/densityplot.r
mice/R/nelsonaalen.r
mice/R/nhanes2.r
mice/R/mice.impute.norm.predict.r
mice/R/as.r
mice/R/mice.impute.norm.r
mice/R/cbind.r
mice/R/pool.r
mice/R/mice.impute.norm.boot.r
mice/R/mice.impute.2l.norm.r
mice/R/xyplot.r
mice/R/quickpred.r
mice/R/mice.impute.2l.pan.r
mice/R/mice.impute.norm.nob.r
mice/R/bwplot.r
mice/R/rbind.r
mice/R/summary.r
mice/R/expandcov.r
mice/R/pops.r
mice/R/rm.whitespace.r
mice/R/auxiliary.r
mice/R/mice.impute.ri.r
mice/R/internal.r
mice/R/mids2spss.r
mice/R/zzz.r
mice/R/pattern1.r
mice/R/fdd.r
mice/R/popmis.r
mice/R/mice.mids.r
mice/R/leiden85.r
mice/R/mice.impute.lda.r
mice/R/mira.r
mice/R/mice.impute.2lonly.mean.r
mice/R/selfreport.r
mice/R/mice.impute.sample.r
mice/R/md.pattern.r
mice/R/with.r
mice/R/mice.impute.2lony.pmm.r
mice/R/pool.r.squared.r
mice/R/mipo.r
mice/R/is.r
mice/R/cc.r
mice/R/getfit.r
mice/R/mice.df.r
mice/R/imports.R
mice/R/mice.impute.pmm.r
mice/R/mice.r
mice/R/mammalsleep.r
mice/R/pool.scalar.r
mice/MD5
mice/DESCRIPTION
mice/man
mice/man/pattern.Rd
mice/man/ic-methods.Rd
mice/man/md.pattern.Rd
mice/man/mice.impute.sample.Rd
mice/man/mice.impute.lda.Rd
mice/man/pool.Rd
mice/man/mice.theme.Rd
mice/man/mice.impute.norm.boot.Rd
mice/man/walking.Rd
mice/man/popmis.Rd
mice/man/mice.impute.fastpmm.Rd
mice/man/mids-class.Rd
mice/man/complete.Rd
mice/man/lm.mids.Rd
mice/man/mice.impute.2lonly.mean.Rd
mice/man/ibind.Rd
mice/man/mice.impute.logreg.Rd
mice/man/ccn-methods.Rd
mice/man/with.mids.Rd
mice/man/bwplot.mids.Rd
mice/man/mammalsleep.Rd
mice/man/mice.mids.Rd
mice/man/boys.Rd
mice/man/mice.impute.ri.Rd
mice/man/appendbreak.Rd
mice/man/selfreport.Rd
mice/man/extractBS.Rd
mice/man/mice.impute.quadratic.Rd
mice/man/mice.impute.mean.Rd
mice/man/ici-methods.Rd
mice/man/version.Rd
mice/man/squeeze.Rd
mice/man/mice.impute.rf.Rd
mice/man/mira-class.Rd
mice/man/mice.Rd
mice/man/pool.scalar.Rd
mice/man/is.mipo.Rd
mice/man/rbind.mids.Rd
mice/man/leiden85.Rd
mice/man/potthoffroy.Rd
mice/man/xyplot.mids.Rd
mice/man/nelsonaalen.Rd
mice/man/windspeed.Rd
mice/man/pops.Rd
mice/man/mice.impute.norm.predict.Rd
mice/man/supports.transparent.Rd
mice/man/nhanes2.Rd
mice/man/long2mids.Rd
mice/man/mice.impute.polr.Rd
mice/man/mice.impute.norm.Rd
mice/man/quickpred.Rd
mice/man/mice.impute.polyreg.Rd
mice/man/nhanes.Rd
mice/man/mids2spss.Rd
mice/man/mice.impute.norm.nob.Rd
mice/man/icn-methods.Rd
mice/man/ifdo.Rd
mice/man/is.mids.Rd
mice/man/densityplot.mids.Rd
mice/man/plot.mids.Rd
mice/man/mdc.Rd
mice/man/fdgs.Rd
mice/man/mice.impute.2l.pan.Rd
mice/man/as.mira.Rd
mice/man/norm.draw.Rd
mice/man/mice.impute.2l.norm.Rd
mice/man/mice.impute.passive.Rd
mice/man/mice.impute.2lonly.norm.Rd
mice/man/stripplot.mids.Rd
mice/man/is.mira.Rd
mice/man/fdd.Rd
mice/man/fico.Rd
mice/man/cci-methods.Rd
mice/man/fluxplot.Rd
mice/man/mice.impute.cart.Rd
mice/man/getfit.Rd
mice/man/tbc.Rd
mice/man/pool.r.squared.Rd
mice/man/as.mids.Rd
mice/man/print.Rd
mice/man/md.pairs.Rd
mice/man/mipo-class.Rd
mice/man/flux.Rd
mice/man/mice.impute.2lonly.pmm.Rd
mice/man/glm.mids.Rd
mice/man/mice.impute.logreg.boot.Rd
mice/man/mids2mplus.Rd
mice/man/summary.Rd
mice/man/pool.compare.Rd
mice/man/mice.impute.pmm.Rd
mice/man/cc-methods.Rd
mice/man/cbind.mids.Rd