plotdiff: plot differential results

In microbial: Do 16s Data Analysis and Generate Figures

plot differential results

Description

plot differential results

Usage

plotdiff(
  res,
  level = "Genus",
  color = NULL,
  pvalue = 0.05,
  padj = NULL,
  log2FC = 0,
  size = 3,
  fontsize.x = 5,
  fontsize.y = 10,
  horiz = TRUE
)

Arguments

res	differential test results from diff_test
level	the level to plot
color	A vector of character use specifying the color
pvalue	pvalue threshold for significant results
padj	adjust p value threshold for significant results
log2FC	log2 Fold Change threshold
size	size for the point
fontsize.x	the size of x axis label
fontsize.y	the size of y axis label
horiz	horizontal or not (TRUE/FALSE)

Value

ggplot object

Author(s)

Kai Guo

Examples

 
data("Physeq")
res <- difftest(physeq,group="group")
plotdiff(res,level="Genus",padj=0.001)

microbial documentation built on May 29, 2024, 5:51 a.m.