prefilter: filter the phyloseq
In microbial: Do 16s Data Analysis and Generate Figures
prefilter R Documentation
filter the phyloseq
Description
filter the phyloseq
Usage
prefilter(physeq, min = 10, perc = 0.05)
Arguments
physeq
A phyloseq object containing merged information of abundance,
taxonomic assignment, sample data including the measured variables and categorical information
of the samples, and / or phylogenetic tree if available.
min
Numeric, the threshold for mininal Phylum shown in samples
perc
Numeric, input the percentage of samples for which to filter low counts.
Value
filter phyloseq object
Author(s)
Kai Guo
Examples
data("Physeq")
physeqs<-prefilter(physeq)
microbial documentation built on May 29, 2024, 5:51 a.m.
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| prefilter | R Documentation |
filter the phyloseq
Description
filter the phyloseq
Usage
prefilter(physeq, min = 10, perc = 0.05)
Arguments
physeq |
A |
min |
Numeric, the threshold for mininal Phylum shown in samples |
perc |
Numeric, input the percentage of samples for which to filter low counts. |
Value
filter phyloseq object
Author(s)
Kai Guo
Examples
data("Physeq")
physeqs<-prefilter(physeq)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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