plotquality: plot the quality for the fastq file
In microbial: Do 16s Data Analysis and Generate Figures
Description
Usage
Arguments
Value
Examples
Description
plot the quality for the fastq file
Usage
1
plotquality(file, n = 5e+05, aggregate = FALSE)
Arguments
file
(Required). character. File path(s) to fastq or fastq.gz file(s).
n
(Optional). Default 500,000. The number of records to sample from the fastq file.
aggregate
(Optional). Default FALSE. If TRUE, compute an aggregate quality profile for all fastq files provided.
Value
figure
Examples
1
plotquality(system.file("extdata", "sam1F.fastq.gz", package="dada2"))
microbial documentation built on Nov. 1, 2021, 5:08 p.m.
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Description Usage Arguments Value Examples
Description
plot the quality for the fastq file
Usage
1 | plotquality(file, n = 5e+05, aggregate = FALSE)
|
Arguments
file |
(Required). character. File path(s) to fastq or fastq.gz file(s). |
n |
(Optional). Default 500,000. The number of records to sample from the fastq file. |
aggregate |
(Optional). Default FALSE. If TRUE, compute an aggregate quality profile for all fastq files provided. |
Value
figure
Examples
1 | plotquality(system.file("extdata", "sam1F.fastq.gz", package="dada2"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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