microcontax: The ConTax Data Package

The consensus taxonomy for prokaryotes is a set of data-sets for best possible taxonomic classification based on 16S rRNA sequence data.

Author
Hilde Vinje, Kristian Hovde Liland, Lars Snipen.
Date of publication
2016-07-29 12:35:57
Maintainer
Lars Snipen <lars.snipen@nmbu.no>
License
GPL-2
Version
1.0

View on CRAN

Man pages

contax.trim
The ConTax data set
genusLookup
Taxonomy lookup
getDomain
Extractor functions for ConTax data
medoids
The ConTax medoids
microcontax-package
The ConTax data package
taxonomy.table
Taxonomy look-up table

Files in this package

microcontax
microcontax/NAMESPACE
microcontax/data
microcontax/data/medoids.rda
microcontax/data/taxonomy.table.rda
microcontax/data/datalist
microcontax/data/contax.trim.rda
microcontax/R
microcontax/R/extractor.R
microcontax/R/microcontax-package.R
microcontax/R/genusLookup.R
microcontax/R/datasets.R
microcontax/MD5
microcontax/DESCRIPTION
microcontax/man
microcontax/man/contax.trim.Rd
microcontax/man/taxonomy.table.Rd
microcontax/man/genusLookup.Rd
microcontax/man/medoids.Rd
microcontax/man/microcontax-package.Rd
microcontax/man/getDomain.Rd