Description Usage Details Author(s) See Also Examples
The genus medoids from the ConTax data set.
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medoids
is a data.frame
object containing the medoide sequences for each genus in
the ConTax data sets (both contax.trim
and contax.full
).
The medoide sequence in a genus is the sequence having the smallest sum of distance to all other members of the same genus. Thus, it is the sequence closest to the centre of the genus. The medoids can be used as the representative of each genus, e.g. for building trees for the entire taxonomy.
The taxonomy information for each sequence can be extracted from the Header
column by the supplied
extractor-functions getDomain
, getPhylum
,...,getGenus
.
Hilde Vinje, Kristian Hovde Liland, Lars Snipen.
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