genusLookup: Taxonomy lookup
In microcontax: The ConTax Data Package
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Extracting taxonomic information from the taxonomy.table.
Usage
1
genusLookup(genera, rank = "Phylum")
Arguments
genera
A vector of texts, the genera names to look up.
rank
A single text, the level of the taxonomy to look up.
Details
Function for looking up higher-level taxonomy of specified genera.
The argument genera must consist of names in the Genus column of the data
set taxonomy.table.
Value
A character vector containing the taxonomy information. Names in genera not recognized will
return NA. Please note that there are some cases of un-assigned taxonomy at some ranks
(Class, Order or Family), this is returned as "unknown".
Author(s)
Hilde Vinje, Lars Snipen.
See Also
Examples
1
2
3
genus <- c("Acidilobus","Nitrosopumilus","Hyphomonas")
genusLookup(genus, rank = "Phylum")
genusLookup(genus, rank = "Class")
microcontax documentation built on Aug. 11, 2020, 5:08 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
Description
Extracting taxonomic information from the taxonomy.table.
Usage
1 | genusLookup(genera, rank = "Phylum")
|
Arguments
genera |
A vector of texts, the genera names to look up. |
rank |
A single text, the level of the taxonomy to look up. |
Details
Function for looking up higher-level taxonomy of specified genera.
The argument genera must consist of names in the Genus column of the data
set taxonomy.table.
Value
A character vector containing the taxonomy information. Names in genera not recognized will
return NA. Please note that there are some cases of un-assigned taxonomy at some ranks
(Class, Order or Family), this is returned as "unknown".
Author(s)
Hilde Vinje, Lars Snipen.
See Also
Examples
1 2 3 | genus <- c("Acidilobus","Nitrosopumilus","Hyphomonas")
genusLookup(genus, rank = "Phylum")
genusLookup(genus, rank = "Class")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.