API for micropan
Microbial Pan-Genome Analysis

Global functions
Mpneumoniae Man page
Mpneumoniae.blast.clustering Man page
Mpneumoniae.blast.distances Man page
Mpneumoniae.blast.panmat Man page
Mpneumoniae.domain.clustering Man page
Mpneumoniae.domain.panmat Man page
Mpneumoniae.table Man page
ORF_index Source code
available.external Source code
bClust Man page Source code
bDist Man page Source code
barrnap Man page Source code
binomixEstimate Man page Source code
binomixMachine Source code
blastAllAll Man page Source code
branchPos Source code
chao Man page Source code
circularize Source code
clusterSignature Source code
dClust Man page Source code
distJaccard Man page Source code
distManhattan Man page Source code
entrezDownload Man page Source code
extractSeq Source code
findOrfs Man page Source code
fluidity Man page Source code
geneWeights Man page Source code
getAccessions Man page Source code
gff2fasta Man page Source code
gffSignature Man page Source code
heaps Man page Source code
hmmerCleanOverlap Man page Source code
hmmerScan Man page Source code
isOrtholog Man page Source code
lorfs Man page Source code
micropan Man page
micropan-package Man page
mpneumoniae Man page
negTruncLogLike Source code
nonoverlap Source code
objectFun Source code
orfLength Man page Source code
panColor Source code
panMatrix Man page Source code
panPrep Man page Source code
panTree Man page Source code
panpca Man page Source code
plot.Binomix Man page Source code
plot.Panmat Man page Source code
plot.Panpca Man page Source code
plot.Pantree Man page Source code
plot.Rarefac Man page Source code
plotBar Source code
plotLoadings Man page Source code
plotScores Man page Source code
prodigal Man page Source code
rarefaction Man page Source code
readBlastTable Man page Source code
readGFF Man page Source code
readHmmer Man page Source code
setLeafAttributes Source code
summary.Binomix Man page Source code
summary.Panmat Man page Source code
summary.Panpca Man page Source code
summary.Pantree Man page Source code
summary.Rarefac Man page Source code
writeGFF Man page Source code
xzcompress Man page Source code
xzuncompress Man page Source code
micropan documentation built on Feb. 15, 2018, 5 p.m.