xmpl: Data sets for use in examples

In micropan: Microbial Pan-Genome Analysis

Description

This data set contains several files with various objects used in examples in some of the functions in the micropan package.

Usage

data(xmpl.bdist)
data(xmpl.bclst)
data(xmpl.panmat)

Details

xmpl.bdist is a tibble with 4 columns holding all BLAST distances between pairs of proteins in an example with 10 small genomes.

xmpl.bclst is a clustering vector of all proteins in the genomes from xmpl.bdist.

xmpl.panmat is a pan-matrix with 10 rows and 1210 columns computed from xmpl.bclst.

Author(s)

Lars Snipen and Kristian Hovde Liland.

Examples

# BLAST distances, only the first 20 are displayed
data(xmpl.bdist)
head(xmpl.bdist)

# Clustering vector
data(xmpl.bclst)
print(xmpl.bclst[1:30])

# Pan-matrix
data(xmpl.panmat)
head(xmpl.panmat)

micropan documentation built on July 15, 2020, 5:08 p.m.