Files in micropan
Microbial Pan-Genome Analysis

inst
inst/extdata
inst/extdata/microfam0.hmm.h3i.xz
inst/extdata/Mpneumoniae.txt.xz
inst/extdata/GID1_vs_GID1.txt.xz
inst/extdata/GID2_vs_GID3.txt.xz
inst/extdata/GID1_vs_Pfam-A.hmm.txt.xz
inst/extdata/microfam0.hmm.h3p.xz
inst/extdata/Mpneumoniae_309_GID2.fsa.xz
inst/extdata/Mpneumoniae_M129_GID1.fsa.xz
inst/extdata/GID3_vs_GID1.txt.xz
inst/extdata/GID2_vs_GID1.txt.xz
inst/extdata/microfam0.hmm.h3m.xz
inst/extdata/GID2_vs_GID2.txt.xz
inst/extdata/GID1_vs_GID3.txt.xz
inst/extdata/microfam0.hmm.h3f.xz
inst/extdata/GID2_vs_Pfam-A.hmm.txt.xz
inst/extdata/GID3_vs_GID3.txt.xz
inst/extdata/Mpneumoniae_FH_GID3.fsa.xz
inst/extdata/GID1_vs_GID2.txt.xz
inst/extdata/GID3_vs_GID2.txt.xz
inst/extdata/Mpneumoniae_309_protein.fsa.xz
inst/extdata/GID3_vs_Pfam-A.hmm.txt.xz
inst/extdata/Mpneumoniae_309_genome.fsa.xz
inst/doc
inst/doc/vignette.Rnw
inst/doc/casestudy.pdf inst/doc/vignette.pdf inst/doc/vignette.R
NAMESPACE
demo
demo/casestudy.R
demo/00Index
data
data/Mpneumoniae.domain.panmat.rda
data/Mpneumoniae.blast.clustering.rda
data/Mpneumoniae.blast.distances.rda
data/Mpneumoniae.blast.panmat.rda
data/Mpneumoniae.domain.clustering.rda
data/Mpneumoniae.table.rda
R
R/rarefaction.R R/panpca.R R/bdist.R R/panprep.R R/entrez.R R/genomedistances.R R/powerlaw.R R/domainclust.R R/xz.R R/mpneumoniae.R R/hmmer3.R R/bclust.R R/prodigal.R R/blasting.R R/binomix.R R/trees.R R/panmat.R
vignettes
vignettes/vignette.Rnw
vignettes/vignette-concordance.tex
vignettes/vignette.tex
MD5
build
build/vignette.rds
DESCRIPTION
man
man/hmmerCleanOverlap.Rd man/rarefaction.Rd man/panPrep.Rd man/generic.Binomix.Rd man/generic.Pantree.Rd man/binomixEstimate.Rd man/panTree.Rd man/mpneumoniae.Rd man/bClust.Rd man/chao.Rd man/prodigalPredict.Rd man/getAccessions.Rd man/heaps.Rd man/xz.Rd man/bDist.Rd man/entrezDownload.Rd man/hmmerScan.Rd man/fluidity.Rd man/distJaccard.Rd man/isOrtholog.Rd man/panMatrix.Rd man/readHmmer.Rd man/blastAllAll.Rd man/distManhattan.Rd man/scores.loadings.Rd man/panpca.Rd man/geneWeights.Rd man/generic.Panpca.Rd man/dClust.Rd man/readBlastTable.Rd man/generic.Rarefac.Rd man/generic.Panmat.Rd
micropan documentation built on May 29, 2017, 11:57 a.m.