Files in micropan
Microbial Pan-Genome Analysis

MD5
DESCRIPTION
NAMESPACE
inst/doc/vignette.pdf
inst/doc/vignette.Rnw
inst/doc/vignette.R inst/doc/casestudy.pdf
inst/extdata/Example_proteins.fasta.xz
inst/extdata/Example.gff.xz
inst/extdata/microfam.hmm.h3i.xz
inst/extdata/Example_genome.fasta.xz
inst/extdata/GID2_vs_GID3.txt.xz
inst/extdata/GID1_vs_GID2.txt.xz
inst/extdata/GID1_vs_GID3.txt.xz
inst/extdata/GID3_vs_GID3.txt.xz
inst/extdata/GID2_vs_GID1.txt.xz
inst/extdata/GID1_vs_Pfam-A.hmm.txt.xz
inst/extdata/GID1_vs_GID1.txt.xz
inst/extdata/GID3_vs_Pfam-A.hmm.txt.xz
inst/extdata/microfam.hmm.h3f.xz
inst/extdata/Example_proteins_GID3.fasta.xz
inst/extdata/GID2_vs_GID2.txt.xz
inst/extdata/GID3_vs_GID2.txt.xz
inst/extdata/microfam.hmm.h3p.xz
inst/extdata/microfam.hmm.h3m.xz
inst/extdata/GID3_vs_GID1.txt.xz
inst/extdata/GID2_vs_Pfam-A.hmm.txt.xz
inst/extdata/Example_proteins_GID1.fasta.xz
inst/extdata/Example_proteins_GID2.fasta.xz
inst/extdata/Mpneumoniae.txt.xz
vignettes/vignette.Rnw
demo/casestudy.R
demo/00Index
R/genomedistances.R R/entrez.R R/hmmer3.R R/prodigal.R R/binomix.R R/micropan.R R/panpca.R R/trees.R R/mpneumoniae.R R/bclust.R R/rarefaction.R R/RcppExports.R R/orfs.R R/blasting.R R/ssu.R R/panprep.R R/domainclust.R R/xz.R R/extern.R R/gff.R R/powerlaw.R R/panmat.R R/bdist.R
src/extractORF.cpp
src/RcppExports.cpp
src/ORF_index.cpp
man/xz.Rd man/gffSignature.Rd man/bDist.Rd man/rarefaction.Rd man/panPrep.Rd man/lorfs.Rd man/micropan.Rd man/isOrtholog.Rd man/barrnap.Rd man/dClust.Rd man/gff2fasta.Rd man/readHmmer.Rd man/panpca.Rd man/geneWeights.Rd man/generic.Pantree.Rd man/generic.Binomix.Rd man/heaps.Rd man/readGFF.Rd man/generic.Panmat.Rd man/bClust.Rd man/hmmerScan.Rd man/entrezDownload.Rd man/findOrfs.Rd man/orfLength.Rd man/hmmerCleanOverlap.Rd man/generic.Panpca.Rd man/readBlastTable.Rd man/blastAllAll.Rd man/scores.loadings.Rd man/distJaccard.Rd man/getAccessions.Rd man/chao.Rd man/fluidity.Rd man/mpneumoniae.Rd man/generic.Rarefac.Rd man/distManhattan.Rd man/panMatrix.Rd man/panTree.Rd man/binomixEstimate.Rd man/prodigal.Rd
build/vignette.rds
data/Mpneumoniae.blast.clustering.rda
data/Mpneumoniae.domain.clustering.rda
data/Mpneumoniae.domain.panmat.rda
data/Mpneumoniae.blast.distances.rda
data/Mpneumoniae.table.rda
data/Mpneumoniae.blast.panmat.rda
micropan documentation built on Feb. 15, 2018, 5 p.m.