microseq: Basic Biological Sequence Analysis

Basic functions for microbial sequence data analysis.

Install the latest version of this package by entering the following in R:
install.packages("microseq")
AuthorLars Snipen, Kristian Hovde Liland
Date of publication2017-01-13 15:40:55
MaintainerLars Snipen <lars.snipen@nmbu.no>
LicenseGPL-2
Version1.2

View on CRAN

Files

inst
inst/extdata
inst/extdata/16S.fasta
inst/extdata/small.fasta
inst/extdata/ssu_bacteria.cm
inst/extdata/small.fastq
inst/extdata/msa.fasta
inst/doc
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
src
src/Makevars
src/translate.cpp
src/revComp.cpp
src/read_file.cpp
src/Makevars.win
src/RcppExports.cpp
NAMESPACE
R
R/microseq-package.R R/primers.R R/utilityfun.R R/multialign.R R/RcppExports.R R/dnaManipulate.R R/fastq.R R/fasta.R
vignettes
vignettes/vignette.Rnw
vignettes/vignette-concordance.tex
vignettes/vignette.tex
vignettes/framed.sty
MD5
build
build/vignette.rds
DESCRIPTION
man
man/amplicon.Rd man/gregexpr.Rd man/readFastq.Rd man/plot.Fasta.Rd man/iupac2regex.Rd man/translate.Rd man/cmalign.Rd man/muscle.Rd man/msalign.Rd man/microseq-package.Rd man/reverseComplement.Rd man/msaTrim.Rd man/readFasta.Rd man/plot.Fastq.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.