microseq: Basic Biological Sequence Analysis

Basic functions for microbial sequence data analysis.

AuthorLars Snipen, Kristian Hovde Liland
Date of publication2017-01-13 15:40:55
MaintainerLars Snipen <lars.snipen@nmbu.no>
LicenseGPL-2
Version1.2

View on CRAN

Files

microseq
microseq/inst
microseq/inst/extdata
microseq/inst/extdata/16S.fasta
microseq/inst/extdata/small.fasta
microseq/inst/extdata/ssu_bacteria.cm
microseq/inst/extdata/small.fastq
microseq/inst/extdata/msa.fasta
microseq/inst/doc
microseq/inst/doc/vignette.Rnw
microseq/inst/doc/vignette.pdf
microseq/src
microseq/src/Makevars
microseq/src/translate.cpp
microseq/src/revComp.cpp
microseq/src/read_file.cpp
microseq/src/Makevars.win
microseq/src/RcppExports.cpp
microseq/NAMESPACE
microseq/R
microseq/R/microseq-package.R microseq/R/primers.R microseq/R/utilityfun.R microseq/R/multialign.R microseq/R/RcppExports.R microseq/R/dnaManipulate.R microseq/R/fastq.R microseq/R/fasta.R
microseq/vignettes
microseq/vignettes/vignette.Rnw
microseq/vignettes/vignette-concordance.tex
microseq/vignettes/vignette.tex
microseq/vignettes/framed.sty
microseq/MD5
microseq/build
microseq/build/vignette.rds
microseq/DESCRIPTION
microseq/man
microseq/man/amplicon.Rd microseq/man/gregexpr.Rd microseq/man/readFastq.Rd microseq/man/plot.Fasta.Rd microseq/man/iupac2regex.Rd microseq/man/translate.Rd microseq/man/cmalign.Rd microseq/man/muscle.Rd microseq/man/msalign.Rd microseq/man/microseq-package.Rd microseq/man/reverseComplement.Rd microseq/man/msaTrim.Rd microseq/man/readFasta.Rd microseq/man/plot.Fastq.Rd

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