orfLength: Length of ORF
In microseq: Basic Biological Sequence Handling
orfLength R Documentation
Length of ORF
Description
Computing the lengths of all ORFs in an orf.table.
Usage
orfLength(orf.table, aa = FALSE)
Arguments
orf.table
A GFF-formatted tibble.
aa
Logical, length in amino acids instead of bases.
Details
By default, computes the length of an ORF in bases, including the
stop codon. However, if aa = TRUE, then the length is in amino acids
after translation. This aa-length is the base-length divided by 3 and minus
1, unless the ORF is truncated and lacks a stop codon.
Value
A vector of lengths.
Author(s)
Lars Snipen and Kristian Hovde Liland.
See Also
findOrfs.
Examples
# See the example in the Help-file for findOrfs.
microseq documentation built on Aug. 21, 2023, 5:10 p.m.
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| orfLength | R Documentation |
Length of ORF
Description
Computing the lengths of all ORFs in an orf.table.
Usage
orfLength(orf.table, aa = FALSE)
Arguments
orf.table |
A GFF-formatted |
aa |
Logical, length in amino acids instead of bases. |
Details
By default, computes the length of an ORF in bases, including the
stop codon. However, if aa = TRUE, then the length is in amino acids
after translation. This aa-length is the base-length divided by 3 and minus
1, unless the ORF is truncated and lacks a stop codon.
Value
A vector of lengths.
Author(s)
Lars Snipen and Kristian Hovde Liland.
See Also
findOrfs.
Examples
# See the example in the Help-file for findOrfs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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