A set of classes and methods to set up and run multispecies, trait based and community size spectrum ecological models, focussed on the marine environment.
|Author||Finlay Scott (JRC, IT) and Julia Blanchard (Sheffield University, UK) and Ken Andersen (DTU Aqua, Copenhagen, DK)|
|Date of publication||2014-04-16 22:29:02|
|Maintainer||Finlay Scott <email@example.com>|
getBiomass-methods: Calculate the total biomass of each species within a size...
getCommunitySlope-methods: Calculate the slope of the community abundance
getEGrowth-methods: getEGrowth method for the size based model
getEReproAndGrowth-methods: getEReproAndGrowth method for the size based model
getESpawning-methods: getESpawning method for the size based model
getFeedingLevel-methods: getFeedingLevel method for the size based model
getFMortGear-methods: Get the fishing mortality by time, gear, species and size
getFMort-methods: Get the total fishing mortality from all fishing gears by...
get_initial_n: Calculate initial population abundances for the community...
getM2Background-methods: getM2Background method for the size based model
getM2-methods: getM2 method for the size based model
getMeanMaxWeight-methods: Calculate the mean maximum weight of the community
getMeanWeight-methods: Calculate the mean weight of the community
getN-methods: Calculate the total abundance in terms of numbers of species...
getPhiPrey-methods: getPhiPrey method for the size based model
getPredRate-methods: getPredRate method for the size based model
getProportionOfLargeFish-methods: Calculate the proportion of large fish
getRDD-methods: getRDD method for the size based model
getRDI-methods: getRDI method for the size based model
getSSB-methods: Calculate the SSB of species
getYieldGear-methods: Calculate the total yield per gear and species
getYield-methods: Calculate the total yield of each species
getZ-methods: getZ method for the size based model
inter: Sample interaction data set
knife_edge: Size based knife-edge selectivity function
mizer: mizer: Multi-species size-based modelling in R
MizerParams-methods: Constructors for objects of 'MizerParams' class
MizerSim-methods: Constructor for the 'MizerSim' class
NS_species_params: Example parameters data sets
plotBiomass-methods: Plot the biomass of each species through time
plotFeedingLevel-methods: Plot the feeding level of each species by size
plotFMort-methods: Plot total fishing mortality of each species by size
plotM2-methods: Plot M2 of each species by size
plot-methods: Summary plot for 'MizerSim' objects
plotSpectra-methods: Plot the abundance spectra of each species and the background...
plotYieldGear-methods: Plot the total yield of each species by gear through time
plotYield-methods: Plot the total yield of each species through time
project-methods: project method for the size based modelling
set_community_model: Sets up parameters for a community-type model
set_trait_model: Sets up parameters for a trait-based model
sigmoid_length: Length based sigmoid selectivity function
summary-methods: Summary method