Man pages for mizer
Multi-Species sIZE Spectrum Modelling in R

getBiomassCalculate the total biomass of each species within a size...
getCommunitySlopeCalculate the slope of the community abundance
getEGrowthgetEGrowth method for the size based model
getEReproAndGrowthgetEReproAndGrowth method for the size based model
getESpawninggetESpawning method for the size based model
getFeedingLevelgetFeedingLevel method for the size based model
getFMortGet the total fishing mortality rate from all fishing gears...
getFMortGearGet the fishing mortality by time, gear, species and size
get_initial_nCalculate initial population abundances for the community...
getM2getM2 method for the size based model
getM2BackgroundgetM2Background method for the size based model
getMeanMaxWeightCalculate the mean maximum weight of the community
getMeanWeightCalculate the mean weight of the community
getNCalculate the total abundance in terms of numbers of species...
getPhiPreygetPhiPrey method for the size based model
getPredRate'getPredRate' method for the size based model
getProportionOfLargeFishCalculate the proportion of large fish
getRDDgetRDD method for the size based model
getRDIgetRDI method for the size based model
getSSBCalculate the SSB of species
getYieldCalculate the total yield of each species
getYieldGearCalculate the total yield per gear and species
getZgetZ method for the size based model
interExample interaction matrix for the North Sea example
knife_edgeSize based knife-edge selectivity function
mizermizer: Multi-species size-based modelling in R
MizerParamsConstructors for objects of 'MizerParams' class
MizerParams-classA class to hold the parameters for a size based model.
MizerSimConstructor for the 'MizerSim' class
MizerSim-classMizerSim
NS_species_paramsExample parameter set based on the North Sea
NS_species_params_gearsExample parameter set based on the North Sea with different...
plotBiomassPlot the biomass of each species through time
plotFeedingLevelPlot the feeding level of each species by size
plotFMortPlot total fishing mortality of each species by size
plotM2Plot M2 of each species by size
plotMizerSimSummary plot for 'MizerSim' objects
plotSpectraPlot the abundance spectra of each species and the background...
plotYieldPlot the total yield of each species through time
plotYieldGearPlot the total yield of each species by gear through time
projectproject method for the size based modelling
project_methodsMethods used for projecting
set_community_modelSets up parameters for a community-type model
set_trait_modelSets up parameters for a trait-based model
sigmoid_lengthLength based sigmoid selectivity function
summary-MizerParams-methodSummarize MizerParams object
summary-MizerSim-methodSummarize MizerSim object
mizer documentation built on Dec. 15, 2017, 1:03 a.m.