Man pages for mizer
Multi-species sIZE spectrum modelling in R

getBiomass-methodsCalculate the total biomass of each species within a size...
getCommunitySlope-methodsCalculate the slope of the community abundance
getEGrowth-methodsgetEGrowth method for the size based model
getEReproAndGrowth-methodsgetEReproAndGrowth method for the size based model
getESpawning-methodsgetESpawning method for the size based model
getFeedingLevel-methodsgetFeedingLevel method for the size based model
getFMortGear-methodsGet the fishing mortality by time, gear, species and size
getFMort-methodsGet the total fishing mortality from all fishing gears by...
get_initial_nCalculate initial population abundances for the community...
getM2Background-methodsgetM2Background method for the size based model
getM2-methodsgetM2 method for the size based model
getMeanMaxWeight-methodsCalculate the mean maximum weight of the community
getMeanWeight-methodsCalculate the mean weight of the community
getN-methodsCalculate the total abundance in terms of numbers of species...
getPhiPrey-methodsgetPhiPrey method for the size based model
getPredRate-methodsgetPredRate method for the size based model
getProportionOfLargeFish-methodsCalculate the proportion of large fish
getRDD-methodsgetRDD method for the size based model
getRDI-methodsgetRDI method for the size based model
getSSB-methodsCalculate the SSB of species
getYieldGear-methodsCalculate the total yield per gear and species
getYield-methodsCalculate the total yield of each species
getZ-methodsgetZ method for the size based model
interSample interaction data set
knife_edgeSize based knife-edge selectivity function
mizermizer: Multi-species size-based modelling in R
MizerParams-classMizerParams
MizerParams-methodsConstructors for objects of 'MizerParams' class
MizerSim-classMizerSim
MizerSim-methodsConstructor for the 'MizerSim' class
NS_species_paramsExample parameters data sets
plotBiomass-methodsPlot the biomass of each species through time
plotFeedingLevel-methodsPlot the feeding level of each species by size
plotFMort-methodsPlot total fishing mortality of each species by size
plotM2-methodsPlot M2 of each species by size
plot-methodsSummary plot for 'MizerSim' objects
plotSpectra-methodsPlot the abundance spectra of each species and the background...
plotYieldGear-methodsPlot the total yield of each species by gear through time
plotYield-methodsPlot the total yield of each species through time
project-methodsproject method for the size based modelling
set_community_modelSets up parameters for a community-type model
set_trait_modelSets up parameters for a trait-based model
sigmoid_lengthLength based sigmoid selectivity function
summary-methodsSummary method
mizer documentation built on May 29, 2017, 5:15 p.m.