Multi-Species sIZE Spectrum Modelling in R

getBiomass | Calculate the total biomass of each species within a size... |

getCommunitySlope | Calculate the slope of the community abundance |

getEGrowth | getEGrowth method for the size based model |

getEReproAndGrowth | getEReproAndGrowth method for the size based model |

getESpawning | getESpawning method for the size based model |

getFeedingLevel | getFeedingLevel method for the size based model |

getFMort | Get the total fishing mortality rate from all fishing gears... |

getFMortGear | Get the fishing mortality by time, gear, species and size |

get_initial_n | Calculate initial population abundances for the community... |

getM2 | getM2 method for the size based model |

getM2Background | getM2Background method for the size based model |

getMeanMaxWeight | Calculate the mean maximum weight of the community |

getMeanWeight | Calculate the mean weight of the community |

getN | Calculate the total abundance in terms of numbers of species... |

getPhiPrey | getPhiPrey method for the size based model |

getPredRate | 'getPredRate' method for the size based model |

getProportionOfLargeFish | Calculate the proportion of large fish |

getRDD | getRDD method for the size based model |

getRDI | getRDI method for the size based model |

getSSB | Calculate the SSB of species |

getYield | Calculate the total yield of each species |

getYieldGear | Calculate the total yield per gear and species |

getZ | getZ method for the size based model |

inter | Example interaction matrix for the North Sea example |

knife_edge | Size based knife-edge selectivity function |

mizer | mizer: Multi-species size-based modelling in R |

MizerParams | Constructors for objects of 'MizerParams' class |

MizerParams-class | A class to hold the parameters for a size based model. |

MizerSim | Constructor for the 'MizerSim' class |

MizerSim-class | MizerSim |

NS_species_params | Example parameter set based on the North Sea |

NS_species_params_gears | Example parameter set based on the North Sea with different... |

plotBiomass | Plot the biomass of each species through time |

plotFeedingLevel | Plot the feeding level of each species by size |

plotFMort | Plot total fishing mortality of each species by size |

plotM2 | Plot M2 of each species by size |

plotMizerSim | Summary plot for 'MizerSim' objects |

plotSpectra | Plot the abundance spectra of each species and the background... |

plotYield | Plot the total yield of each species through time |

plotYieldGear | Plot the total yield of each species by gear through time |

project | project method for the size based modelling |

project_methods | Methods used for projecting |

set_community_model | Sets up parameters for a community-type model |

set_trait_model | Sets up parameters for a trait-based model |

sigmoid_length | Length based sigmoid selectivity function |

summary-MizerParams-method | Summarize MizerParams object |

summary-MizerSim-method | Summarize MizerSim object |

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