Files in mizer
Dynamic Multi-Species Size Spectrum Modelling
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/extension.R
R/setColours.R
R/MizerScan-class.R
R/diffusion.R
R/getOscillationModeSim.R
R/ArrayTimeBySpecies-class.R
R/setMetadata.R
R/newSingleSpeciesParams.R
R/plotYieldVsF.R
R/calibrate.R
R/MizerParams-class.R
R/scanModel.R
R/setExtDiffusion.R
R/defaults_edition.R
R/age_mat.R
R/ArrayTimeBySpeciesBySize-class.R
R/getRequiredRDD.R
R/transport.R
R/setSearchVolume.R
R/numerical_methods.R
R/indicator_functions.R
R/sizeIntegral.R
R/setBevertonHolt.R
R/steadySingleSpecies.R
R/steadyNewton.R
R/sim_rates.R
R/rate_functions.R
R/newMultispeciesParams.R
R/animateSpectra.R
R/customFunction.R
R/generic_methods.R
R/resource_dynamics.R
R/setInitialValues.R
R/resource_semichemostat.R
R/scaleRates.R
R/wrapper_functions.R
R/setMaxIntakeRate.R
R/get_initial_n.R
R/data.R
R/validSpeciesParams.R
R/pred_kernel_funcs.R
R/project_methods.R
R/setPredKernel.R
R/plotYieldObservedVsModel.R
R/selectivity_funcs.R
R/deprecated.R
R/manipulate_species.R
R/upgrade.R
R/setExtEncounter.R
R/setMetabolicRate.R
R/saveParams.R
R/setReproduction.R
R/second_order_w.R
R/info_signals.R
R/setFishing.R
R/setInteraction.R
R/MizerSim-class.R
R/background.R
R/plots.R
R/matchGrowth.R
R/project_n.R
R/reproduction.R
R/observations.R
R/mizer-package.R
R/resource_logistic.R
R/compareParams.R
R/ArrayResourceBySize-class.R
R/setExtMort.R
R/steady.R
R/setResource.R
R/ArraySpeciesBySize-class.R
R/summary_methods.R
R/steadyState.R
R/zzz.R
R/species_params.R
R/match.R
R/getSteadyResidual.R
R/helpers.R
R/plotBiomassObservedVsModel.R
R/project.R
R/registerExtensions.R
R/scan_setters.R
src/RcppExports.cpp
src/inner_project_loop.cpp
src/project_n_loop.cpp
inst/WORDLIST
inst/llms.txt
inst/doc/mizer_vignette.html
inst/doc/mizer_vignette.R
inst/doc/mizer_vignette.Rmd
inst/doc/celtic_gear_params.csv
inst/doc/celtic_interaction.csv
inst/shiny/selectivity_effects/app.R
inst/shiny/selectivity_effects/hake_mullet.RDS
inst/shiny/selectivity_effects/www/logo_minouw_blue.png
inst/examples/supplementary_material.R
inst/extdata/NS_f_history.csv
inst/extdata/NS_species_params.csv
inst/extdata/NS_interaction.csv
inst/skills/calibrate-model/quick-reference.md
inst/skills/calibrate-model/SKILL.md
inst/skills/upgrade-mizer-code/SKILL.md
inst/skills/upgrade-mizer-code/references/mizer-3.4.md
inst/skills/upgrade-mizer-code/references/mizer-3.0.md
inst/skills/upgrade-mizer-code/references/mizer-3.3.md
inst/skills/upgrade-mizer-code/references/mizer-3.1.md
inst/skills/upgrade-mizer-code/references/mizer-3.2.md
inst/skills/use-extension-packages/SKILL.md
inst/skills/build-model/quick-reference.md
inst/skills/build-model/SKILL.md
inst/skills/upgrade-extension-package/SKILL.md
inst/skills/analyse-stability/SKILL.md
inst/skills/run-simulation/quick-reference.md
inst/skills/run-simulation/SKILL.md
inst/skills/analyse-and-plot/quick-reference.md
inst/skills/analyse-and-plot/SKILL.md
inst/skills/create-extension-package/SKILL.md
inst/skills/extend-mizer/SKILL.md
inst/skills/change-parameters/quick-reference.md
inst/skills/change-parameters/SKILL.md
inst/skills/set-up-fishing/quick-reference.md
inst/skills/set-up-fishing/SKILL.md
inst/skills/understand-size-spectrum-dynamics/SKILL.md
build/vignette.rds
tests/testthat.R
tests/spelling.R
tests/testthat/test-ArrayTimeBySpecies-class.R
tests/testthat/test-matchGrowth.R
tests/testthat/test-generic_methods.R
tests/testthat/test-MizerParams-class.R
tests/testthat/test-steady.R
tests/testthat/test-getRequiredRDD.R
tests/testthat/test-setSearchVolume.R
tests/testthat/test-MizerSim-class.R
tests/testthat/test-sim_rates.R
tests/testthat/test-resource_logistic.R
tests/testthat/test-backwards_compatibility.R
tests/testthat/test-setMetabolicRate.R
tests/testthat/test-getSteadyResidual.R
tests/testthat/test-extension.R
tests/testthat/test-validSpeciesParams.R
tests/testthat/test-get_initial_n.R
tests/testthat/test-transport.R
tests/testthat/test-steadySingleSpecies.R
tests/testthat/test-setResource.R
tests/testthat/test-diffusion.R
tests/testthat/test-compareParams.R
tests/testthat/test-numerical_methods.R
tests/testthat/test-selectivity_funcs.R
tests/testthat/test-setExtMort.R
tests/testthat/test-zzz.R
tests/testthat/test-reproduction.R
tests/testthat/test-plotYieldObservedVsModel.R
tests/testthat/test-age_mat.R
tests/testthat/test-scanModel.R
tests/testthat/test-observations.R
tests/testthat/test-ArrayResourceBySize-class.R
tests/testthat/test-plotBiomassObservedVsModel.R
tests/testthat/test-sizeIntegral.R
tests/testthat/test-rate_functions.R
tests/testthat/test-newMultispeciesParams.R
tests/testthat/test-data.R
tests/testthat/test-registerExtensions.R
tests/testthat/test-setMetadata.R
tests/testthat/test-setMaxIntakeRate.R
tests/testthat/test-plots.R
tests/testthat/test-setFishing.R
tests/testthat/test-setColours.R
tests/testthat/test-setExtEncounter.R
tests/testthat/test-pred_kernel_funcs.R
tests/testthat/test-single_species.R
tests/testthat/test-setBevertonHolt.R
tests/testthat/test-newSingleSpeciesParams.R
tests/testthat/helper.R
tests/testthat/test-project_n.R
tests/testthat/test-steadyNewton.R
tests/testthat/test-second_order_summary.R
tests/testthat/test-steadyState.R
tests/testthat/Rplots.pdf
tests/testthat/test-helpers.R
tests/testthat/test-calibrate.R
tests/testthat/test-scaleRates.R
tests/testthat/test-analytic_transport.R
tests/testthat/test-resource_semichemostat.R
tests/testthat/test-setReproduction.R
tests/testthat/test-setInitialValues.R
tests/testthat/test-saveParams.R
tests/testthat/test-resource_dynamics.R
tests/testthat/test-scan_setters.R
tests/testthat/test-setInteraction.R
tests/testthat/test-background.R
tests/testthat/test-match.R
tests/testthat/test-upgrade.R
tests/testthat/test-getOscillationModeSim.R
tests/testthat/test-manipulate_species.R
tests/testthat/test-MizerScan-class.R
tests/testthat/test-indicator_functions.R
tests/testthat/test-summary_methods.R
tests/testthat/test-customFunction.R
tests/testthat/test-setExtDiffusion.R
tests/testthat/test-animateSpectra.R
tests/testthat/test-second_order_w.R
tests/testthat/test-reexports.R
tests/testthat/test-project_methods.R
tests/testthat/test-analytic_results.R
tests/testthat/test-plotYieldVsF.R
tests/testthat/test-defaults_edition.R
tests/testthat/test-wrapper_functions.R
tests/testthat/test-species_params.R
tests/testthat/test-project.R
tests/testthat/test-setPredKernel.R
tests/testthat/test-ArrayTimeBySpeciesBySize-class.R
tests/testthat/test-info_signals.R
tests/testthat/test-ArraySpeciesBySize-class.R
tests/testthat/values/set_trait_model_search_vol
tests/testthat/values/projectp
tests/testthat/values/set_multispecies_model_cc_pp
tests/testthat/values/getRDD
tests/testthat/values/getProportionOfLargeFish
tests/testthat/values/getYield
tests/testthat/values/set_multispecies_model_initial_n
tests/testthat/values/set_trait_phi_prey
tests/testthat/values/set_community_model_initial_n_pp
tests/testthat/values/set_trait_model_initial_n_pp
tests/testthat/values/set_trait_model_psi
tests/testthat/values/set_multispecies_model_intake_max
tests/testthat/values/set_community_model_psi
tests/testthat/values/getFMort
tests/testthat/values/set_trait_model_metab
tests/testthat/values/getDiet
tests/testthat/values/set_multispecies_model_initial_n_pp
tests/testthat/values/set_community_model_pred_rate
tests/testthat/values/set_multispecies_model_maturity
tests/testthat/values/plotFMort
tests/testthat/values/set_community_model_initial_n
tests/testthat/values/set_community_model_search_vol
tests/testthat/values/set_community_model_rr_pp
tests/testthat/values/set_multispecies_model_mu_b
tests/testthat/values/getFMortGear
tests/testthat/values/getMeanMaxWeight
tests/testthat/values/getPredRate
tests/testthat/values/set_community_model_intake_max
tests/testthat/values/getMeanWeight
tests/testthat/values/getBiomass
tests/testthat/values/set_multispecies_model_metab
tests/testthat/values/set_trait_model_pred_rate
tests/testthat/values/set_community_model_cc_pp
tests/testthat/values/getSSB
tests/testthat/values/getEGrowth
tests/testthat/values/getMort
tests/testthat/values/set_trait_model_rr_pp
tests/testthat/values/set_multispecies_model_pred_rate
tests/testthat/values/projectn
tests/testthat/values/getERepro
tests/testthat/values/getResourceMort
tests/testthat/values/set_community_model_mu_b
tests/testthat/values/set_multispecies_model_phi_prey
tests/testthat/values/set_multispecies_model_psi
tests/testthat/values/set_trait_model_cc_pp
tests/testthat/values/set_community_phi_prey
tests/testthat/values/getEReproAndGrowth
tests/testthat/values/set_multispecies_model_search_vol
tests/testthat/values/set_community_model_metab
tests/testthat/values/set_trait_model_intake_max
tests/testthat/values/getFeedingLevel
tests/testthat/values/set_trait_model_mu_b
tests/testthat/values/steady
tests/testthat/values/set_multispecies_model_rr_pp
tests/testthat/values/getPredMort
tests/testthat/values/getRDI
tests/testthat/values/getCommunitySlope
tests/testthat/values/getYieldGear
tests/testthat/values/set_trait_model_initial_n
tests/testthat/values/getN
tests/testthat/assets/simc.0.4.rds
tests/testthat/assets/simc.1.0.rds
tests/testthat/_snaps/steadyState.md
tests/testthat/_snaps/backwards_compatibility.md
tests/testthat/_snaps/newSingleSpeciesParams.md
tests/testthat/_snaps/project.md
tests/testthat/_snaps/indicator_functions.md
tests/testthat/_snaps/diffusion.md
tests/testthat/_snaps/summary_methods.md
tests/testthat/_snaps/project_n.md
tests/testthat/_snaps/rate_functions.md
tests/testthat/_snaps/plotYieldObservedVsModel/plotyieldobservedvsmodel.svg
tests/testthat/_snaps/plotBiomassObservedVsModel/plotbiomassobservedvsmodel.svg
tests/testthat/_snaps/plots/plot-biomass.svg
tests/testthat/_snaps/plots/plot-diet.svg
tests/testthat/_snaps/plots/plot-spectra.svg
vignettes/mizer_vignette.Rmd
vignettes/reflib.bib
data/inter.RData
data/NS_params.rda
data/NS_interaction.RData
data/NS_sim.rda
data/NS_species_params.rda
data/NS_species_params_gears.rda
man/NS_params.Rd
man/get_sim_rate_time_elements.Rd
man/renameSpecies.Rd
man/plotSpectra.Rd
man/setInteraction.Rd
man/slotNames.Rd
man/projectRDD.Rd
man/proportion_ylim.Rd
man/size_dim_labels.Rd
man/mizerEReproAndGrowth.Rd
man/plotYieldVsF.Rd
man/plot_size_xlim.Rd
man/setSearchVolume.Rd
man/MizerSim.Rd
man/extensionVersions.Rd
man/w.Rd
man/scan_gear_installed.Rd
man/second_order_w.Rd
man/getFMortGear.Rd
man/make_linesize.Rd
man/saveParams.Rd
man/scan_x_var.Rd
man/validation_key.Rd
man/setRmax.Rd
man/finalN.Rd
man/upgrade.MizerParams.Rd
man/calibrate_to.Rd
man/recordExtension.Rd
man/plot.ArrayTimeBySpecies.Rd
man/getTrophicLevelBySpecies.Rd
man/species_params.Rd
man/as.data.frame.Rd
man/convert_plot_density_axis.Rd
man/resource_length_defaults.Rd
man/getOscillationModeSim.Rd
man/setBevertonHolt.Rd
man/NS_species_params_gears.Rd
man/array_ylim.Rd
man/plotCDF2.Rd
man/dot-checkRateFunctionOutput.Rd
man/as_series_matrix.Rd
man/reexports.Rd
man/mizerMort.Rd
man/setRateFunction.Rd
man/get_time_elements.Rd
man/sizeIntegral.Rd
man/resolve_cdf_power.Rd
man/print.mizer_plot.Rd
man/extensionVersion.Rd
man/age_mat_vB.Rd
man/ArrayTimeBySpecies.Rd
man/convert_plot_spectrum_axis.Rd
man/newMultispeciesParams.Rd
man/MizerScan.Rd
man/upgrade.MizerSim.Rd
man/signal_removed_species_params.Rd
man/log_breaks.Rd
man/setParams.Rd
man/ArraySpeciesBySize.Rd
man/animate.Rd
man/mizer_tooltip_vars.Rd
man/get_sim_rate_slice.Rd
man/validateExtensionsVector.Rd
man/addSpecies.Rd
man/superseded_steady.Rd
man/getRDD.Rd
man/getZ.Rd
man/interpolate_relative_frames.Rd
man/getResourceMort.Rd
man/plotSpectraRelative.Rd
man/makeExtensions.Rd
man/spectrum_density_wrt.Rd
man/array_types.Rd
man/resource_params.Rd
man/initialN-set.Rd
man/validSpeciesParams.Rd
man/truncated_lognormal_pred_kernel.Rd
man/mizer-package.Rd
man/plotM2.Rd
man/plotFeedingLevel.Rd
man/check_per_log_size.Rd
man/getPredMort.Rd
man/getMeanWeight.Rd
man/scanModel.Rd
man/dim_from_labels.Rd
man/plot_size_xlab.Rd
man/get_f0_default.Rd
man/removeSpecies.Rd
man/get_steady_state_n.Rd
man/get_ArrayResourceBySize_w.Rd
man/setComponent.Rd
man/scanEffort.Rd
man/getTrophicLevel.Rd
man/slot.Rd
man/getEReproAndGrowth.Rd
man/steadySingleSpecies.Rd
man/validate_density_wrt.Rd
man/get_species_size_rate_from_sim.Rd
man/NS_species_params.Rd
man/repair_params.Rd
man/with_info_level.Rd
man/calibrateNumber.Rd
man/plot_spectra.Rd
man/scaleModel.Rd
man/set_scan_maximum.Rd
man/plotHover.Rd
man/setResource.Rd
man/mizerDiffusion.Rd
man/ArrayTimeBySpeciesBySize.Rd
man/addPlot.Rd
man/getFMort.Rd
man/getYield.Rd
man/prepare_spectra_cdf_data.Rd
man/mizerFeedingLevel.Rd
man/frozen_rate_params.Rd
man/sweep_arms.Rd
man/noRDD.Rd
man/set_species_param_default.Rd
man/project_n_tr_bdf2.Rd
man/getEGrowth.Rd
man/plotFMort.Rd
man/get_species_time_rate_from_sim.Rd
man/getRDI.Rd
man/append_total_line.Rd
man/mizerERepro.Rd
man/getDiffusion.Rd
man/plotComparisonDataFrame.Rd
man/mizerEGrowth.Rd
man/plot_y_is_log.Rd
man/ArrayResourceBySize_plot_data.Rd
man/renameGear.Rd
man/trapezoidal_bin_average.Rd
man/projectUntilSettled.Rd
man/project_n.Rd
man/adjustSizeGrid.Rd
man/newTraitParams.Rd
man/dot-hasSlot.Rd
man/validEffortVector.Rd
man/get_size_range_array.Rd
man/MizerSim-class.Rd
man/setMaxIntakeRate.Rd
man/expandSizeGrid.Rd
man/params_as_sim.Rd
man/getFluxGradient.Rd
man/knife_edge_length.Rd
man/use_predation_diffusion.Rd
man/sigmoid_length.Rd
man/filter_plot_length_limits.Rd
man/mizer_rates_subset.Rd
man/tuneSteadyState.Rd
man/getCommunitySlope.Rd
man/ArrayResourceBySize.Rd
man/getM2Background.Rd
man/validSim.Rd
man/other_mort.Rd
man/extension_needs_upgrading.Rd
man/get_gamma_default.Rd
man/broadcast_dims.Rd
man/sim_size_rate.Rd
man/NS_interaction.Rd
man/resolve_array_type.Rd
man/power_law_pred_kernel.Rd
man/getYieldGear.Rd
man/validate_second_order_w.Rd
man/scan_y_label.Rd
man/mizerFMortGear.Rd
man/flux_units.Rd
man/gaussian_mixture_pred_kernel.Rd
man/setExtDiffusion.Rd
man/validGearParams.Rd
man/constant_other.Rd
man/plotSpectra2.Rd
man/objectExtensions.Rd
man/getProportionOfLargeFish.Rd
man/plot_feeding_level.Rd
man/is_validated.Rd
man/plotMizerParams.Rd
man/plotRelativeDataFrame.Rd
man/get_h_default.Rd
man/MizerParams.Rd
man/inter.Rd
man/plotRelative.Rd
man/getParams.Rd
man/parsePlotLog.Rd
man/setInitialValues.Rd
man/runExtensionUpgrades.Rd
man/mizerRDI.Rd
man/array_log_y.Rd
man/plot.ArraySpeciesBySize.Rd
man/prepare_MizerScan_plot_data.Rd
man/getEffort.Rd
man/upgradeSim.Rd
man/prepare_ArrayTimeBySpecies_plot_data.Rd
man/add_scan_annotations.Rd
man/merge_dim_labels.Rd
man/spectra_y_label.Rd
man/getStability.Rd
man/customFunction.Rd
man/plot_size_x_var.Rd
man/signal_frozen.Rd
man/setMetadata.Rd
man/gear_params.Rd
man/getDiscreteStability.Rd
man/observation_columns.Rd
man/plot.ArrayResourceBySize.Rd
man/resource_length_params.Rd
man/model_observation.Rd
man/setPredKernel.Rd
man/getCriticalFeedingLevel.Rd
man/plot_size_axis.Rd
man/matchBiomasses.Rd
man/collect_dimnames.Rd
man/reconcileSpeciesParams.Rd
man/matchNumbers.Rd
man/getM2.Rd
man/needs_upgrading.Rd
man/calibrateBiomass.Rd
man/plot_diet.Rd
man/power_law_bin_average.Rd
man/default_pred_kernel_params.Rd
man/setMetabolicRate.Rd
man/plot.ArrayTimeBySpeciesBySize.Rd
man/spectra_bin_width.Rd
man/lognormal_pred_kernel.Rd
man/mizerFMort.Rd
man/plot_cdf.Rd
man/resolve_spectrum_power.Rd
man/density_measure_jacobian.Rd
man/indicator_functions.Rd
man/double_sigmoid_length.Rd
man/getSSB.Rd
man/free_gear_name.Rd
man/different.Rd
man/get_initial_n.Rd
man/box_pred_kernel.Rd
man/signal_info.Rd
man/sim_species_rate.Rd
man/validate_array_type.Rd
man/newCommunityParams.Rd
man/plot_length_params.Rd
man/mizerResourceMort.Rd
man/mizerPredRate.Rd
man/bin_average_weight.Rd
man/bin_midpoints.Rd
man/get_ArraySpeciesBySize_w.Rd
man/isVersionRequirement.Rd
man/plotDataFrame.Rd
man/setReproduction.Rd
man/matchGrowth.Rd
man/emptyParams.Rd
man/plotBiomassObservedVsModel.Rd
man/plotGrowthCurves.Rd
man/getPhiPrey.Rd
man/encounter_kernel.Rd
man/getTimes.Rd
man/initialNOther-set.Rd
man/report_scan_convergence.Rd
man/array_type.Rd
man/compareParams.Rd
man/mizerPredMort.Rd
man/getSteadyResidual.Rd
man/distanceSSLogN.Rd
man/superseded_accessors.Rd
man/l2w.Rd
man/removeBackgroundSpecies.Rd
man/plotYieldGear.Rd
man/check_finite.Rd
man/check_band_vars.Rd
man/plot.ArrayTimeByResourceBySize.Rd
man/cutoff_min_w.Rd
man/density_target_measure.Rd
man/getGrowthCurves.Rd
man/constantEggRDI.Rd
man/newSingleSpeciesParams.Rd
man/select_scan_series.Rd
man/project.Rd
man/constantRDD.Rd
man/getPredRate.Rd
man/set_trait_model.Rd
man/getESpawning.Rd
man/get_phi.Rd
man/setExtMort.Rd
man/relative_difference.Rd
man/cdf_y_label.Rd
man/signal_gear_params_changes.Rd
man/initial_effort.Rd
man/select_gear_rows.Rd
man/flux_from_rates.Rd
man/print.Rd
man/density_measures.Rd
man/NS_sim.Rd
man/get_ArrayTimeBySpeciesBySize_w.Rd
man/findSteadyState.Rd
man/getMeanMaxWeight.Rd
man/isSteady.Rd
man/valid_species_arg.Rd
man/defaults_edition.Rd
man/plot.Rd
man/validParams.Rd
man/plotCDF.Rd
man/knife_edge.Rd
man/plotting_functions.Rd
man/mizerRates.Rd
man/project_simple.Rd
man/slot-set.Rd
man/get_yield_observed.Rd
man/needed_rates.Rd
man/calc_selectivity.Rd
man/ArrayTimeByResourceBySize.Rd
man/species_size_range_mask.Rd
man/mizerEncounter.Rd
man/signal_frozen_changes.Rd
man/getDiet.Rd
man/summary_functions.Rd
man/gear_names.Rd
man/default_info_level.Rd
man/getSimParams.Rd
man/plot_growth_curves.Rd
man/resource_semichemostat.Rd
man/getMort.Rd
man/add_total_line.Rd
man/set_multispecies_model.Rd
man/getRequiredRDD.Rd
man/copy_scan_attributes.Rd
man/resource_power_law.Rd
man/resource_logistic.Rd
man/BevertonHoltRDD.Rd
man/setFishing.Rd
man/upgradeParams.Rd
man/scan_plot_params.Rd
man/project_n_2.Rd
man/ArraySpeciesBySize_plot_data.Rd
man/plotDiet.Rd
man/N.Rd
man/make_mizer_plot.Rd
man/interpolate_in_log_size.Rd
man/install_tmp_gear.Rd
man/plotYield.Rd
man/RickerRDD.Rd
man/scaleRates.Rd
man/extensionRequirements.Rd
man/getERepro.Rd
man/resource_constant.Rd
man/signal_defaulted_length_weight.Rd
man/valid_gears_arg.Rd
man/length_at_size.Rd
man/getFeedingLevel.Rd
man/getRates.Rd
man/summary.Rd
man/getEncounter.Rd
man/measure_on_attractor.Rd
man/total_contributors.Rd
man/getFlux.Rd
man/plot_size_tooltip.Rd
man/get_ks_default.Rd
man/initialNResource-set.Rd
man/set_community_model.Rd
man/plotYieldObservedVsModel.Rd
man/coerceToExtensionClass.Rd
man/dim_extents.Rd
man/age_mat.Rd
man/validObject.Rd
man/density_size_unit.Rd
man/setColours.Rd
man/plotPredMort.Rd
man/array_density_wrt.Rd
man/sigmoid_weight.Rd
man/record_given_species_params.Rd
man/distanceMaxRelRDI.Rd
man/setExtEncounter.Rd
man/simExtensionClass.Rd
man/ensureExtensionNamespaces.Rd
man/signal_ignored_changes.Rd
man/match_to.Rd
man/plotBiomass.Rd
man/convert_plot_size_axis.Rd
man/plot2.Rd
man/str.Rd
man/apply_wlim.Rd
man/mizer_needs_upgrading.Rd
man/resolve_second_order_w.Rd
man/completeSpeciesParams.Rd
man/getN.Rd
man/density_measure_weight.Rd
man/signal_not_recalculated.Rd
man/convert_density_units.Rd
man/plotMizerSim.Rd
man/upgrade_s4_to_s3.Rd
man/NOther.Rd
man/markBackground.Rd
man/MizerParams-class.Rd
man/SheperdRDD.Rd
man/expand_kernel_offsets.Rd
man/getBiomass.Rd
man/plot.MizerScan.Rd
man/figures/mizer.png
man/figures/lifecycle-stable.svg
man/figures/lifecycle-soft-deprecated.svg
man/figures/Beverton-Holt-plot-1.png
man/figures/logo.png
man/figures/mizer_twitter.jpeg
man/figures/unnamed-chunk-4-1.png
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-maturing.svg
