API for mizer
Multi-Species sIZE Spectrum Modelling in R

Global functions
BevertonHoltRDD Man page Source code
MizerParams Man page
MizerParams-class Man page
MizerSim Man page Source code
MizerSim-class Man page
N Man page Source code
NOther Man page Source code
NResource Man page Source code
NS_params Man page
NS_species_params Man page
NS_species_params_gears Man page
RickerRDD Man page Source code
SheperdRDD Man page Source code
`gear_params<-` Source code
`initialN<-` Source code
`initialNOther<-` Source code
`initialNResource<-` Source code
`other_params<-` Source code
`resource_params<-` Source code
`species_params<-` Source code
box_pred_kernel Man page Source code
compareParams Man page Source code
constantEggRDI Man page Source code
constantRDD Man page Source code
constant_other Man page Source code
customFunction Man page Source code
default_pred_kernel_params Man page Source code
different Man page Source code
distanceMaxRelRDI Man page Source code
distanceSSLogN Man page Source code
double_sigmoid_length Man page Source code
dw Man page Source code
dw_full Man page Source code
emptyParams Man page Source code
finalN Man page Source code
finalNOther Man page Source code
finalNResource Man page Source code
gear_params Man page Source code
gear_params<- Man page
getBiomass Man page Source code
getBiomassFrame Man page Source code
getCatchability Man page Source code
getColours Man page Source code
getCommunitySlope Man page Source code
getComponent Man page Source code
getCriticalFeedingLevel Man page Source code
getDiet Man page Source code
getEGrowth Man page Source code
getERepro Man page Source code
getEReproAndGrowth Man page Source code
getESpawning Man page
getEffort Man page Source code
getEncounter Man page Source code
getExtMort Man page Source code
getFMort Man page Source code
getFMortGear Man page Source code
getFeedingLevel Man page Source code
getGrowthCurves Man page Source code
getInitialEffort Man page Source code
getInteraction Man page Source code
getLinetypes Man page Source code
getM2 Man page
getM2Background Man page
getMaturityProportion Man page Source code
getMaxIntakeRate Man page Source code
getMeanMaxWeight Man page Source code
getMeanWeight Man page Source code
getMetabolicRate Man page Source code
getMort Man page Source code
getN Man page Source code
getParams Man page Source code
getPhiPrey Man page Source code
getPredKernel Man page Source code
getPredMort Man page Source code
getPredRate Man page Source code
getProportionOfLargeFish Man page Source code
getRDD Man page Source code
getRDI Man page Source code
getRateFunction Man page Source code
getRates Man page Source code
getReproductionProportion Man page Source code
getResourceCapacity Man page Source code
getResourceDynamics Man page Source code
getResourceMort Man page Source code
getResourceRate Man page Source code
getSSB Man page Source code
getSearchVolume Man page Source code
getSelectivity Man page Source code
getTimes Man page Source code
getYield Man page Source code
getYieldGear Man page Source code
getZ Man page
get_gamma_default Man page Source code
get_h_default Man page Source code
get_initial_n Man page Source code
get_ks_default Man page Source code
get_phi Man page Source code
get_power_law_mort Source code
get_required_reproduction Man page Source code
get_size_range_array Man page Source code
get_time_elements Man page Source code
get_w_min_idx Source code
idxFinalT Man page Source code
indicator_functions Man page
initialN Man page Source code
initialN<- Man page
initialNOther Man page Source code
initialNOther<- Man page
initialNResource Man page Source code
initialNResource<- Man page
inner_project_loop Source code
inter Man page
knife_edge Man page Source code
log_breaks Man page Source code
lognormal_pred_kernel Man page Source code
melt Man page
mizer Man page
mizer-package Man page
mizerEGrowth Man page Source code
mizerERepro Man page Source code
mizerEReproAndGrowth Man page Source code
mizerEncounter Man page Source code
mizerFMort Man page Source code
mizerFMortGear Man page Source code
mizerFeedingLevel Man page Source code
mizerMort Man page Source code
mizerPredMort Man page Source code
mizerPredRate Man page Source code
mizerRDI Man page Source code
mizerRates Man page Source code
mizerResourceMort Man page Source code
newCommunityParams Man page Source code
newMultispeciesParams Man page Source code
newTraitParams Man page Source code
noRDD Man page Source code
other_params Man page Source code
other_params<- Man page
plot,MizerParams,missing-method Man page
plot,MizerSim,missing-method Man page
plotBiomass Man page Source code
plotDiet Man page Source code
plotFMort Man page Source code
plotFeedingLevel Man page Source code
plotGrowthCurves Man page Source code
plotM2 Man page
plotPredMort Man page Source code
plotSpectra Man page Source code
plotYield Man page Source code
plotYieldGear Man page Source code
plot_spectra Source code
plotlyBiomass Man page Source code
plotlyFMort Man page Source code
plotlyFeedingLevel Man page Source code
plotlyGrowthCurves Man page Source code
plotlyPredMort Man page Source code
plotlySpectra Man page Source code
plotlyYield Man page Source code
plotlyYieldGear Man page Source code
plotting_functions Man page
power_law_pred_kernel Man page Source code
project Man page Source code
projectToSteady Man page Source code
project_simple Man page Source code
reexports Man page
removeComponent Man page Source code
resource_constant Man page Source code
resource_params Man page Source code
resource_params<- Man page
resource_semichemostat Man page Source code
retune_erepro Man page Source code
setBevertonHolt Man page Source code
setColours Man page Source code
setComponent Man page Source code
setExtMort Man page Source code
setFishing Man page Source code
setInitialValues Man page Source code
setInteraction Man page Source code
setLinetypes Man page Source code
setMaxIntakeRate Man page Source code
setMetabolicRate Man page Source code
setParams Man page Source code
setPredKernel Man page Source code
setRateFunction Man page Source code
setReproduction Man page Source code
setResource Man page Source code
setRmax Man page
setSearchVolume Man page Source code
set_community_model Man page Source code
set_multispecies_model Man page Source code
set_species_param_default Man page Source code
set_trait_model Man page Source code
sigmoid_length Man page Source code
sigmoid_weight Man page Source code
species_params Man page Source code
species_params<- Man page
steady Man page Source code
summary,MizerParams-method Man page
summary,MizerSim-method Man page
summary_functions Man page
truncated_lognormal_pred_kernel Man page Source code
upgradeParams Man page Source code
upgradeSim Man page Source code
validColour Source code
validEffortArray Source code
validEffortVector Man page Source code
validGearParams Man page Source code
validMizerParams Source code
validParams Man page Source code
validSpeciesParams Man page Source code
valid_MizerSim Source code
valid_species_arg Man page Source code
w Man page Source code
w_full Man page Source code
mizer documentation built on March 21, 2021, 5:07 p.m.