summary_functions: Description of summary functions

In mizer: Dynamic Multi-Species Size Spectrum Modelling

Description of summary functions

Description

Mizer provides a range of functions to summarise the results of a simulation.

Details

A list of available summary functions is given in the table below.

Function	Returns	Description
getDiet()	Three dimensional array (predator x size x prey)	Diet of predator at size, resolved by prey species
getSSB()	Two dimensional array (time x species)	Total Spawning Stock Biomass (SSB) of each species through time where SSB is calculated as the sum of weight of all mature individuals.
getBiomass()	Two dimensional array (time x species)	Total biomass of each species through time.
getN()	Two dimensional array (time x species)	Total abundance of each species through time.
getFeedingLevel()	Three dimensional array (time x species x size)	Feeding level of each species by size through time.
getM2	Three dimensional array (time x species x size)	The predation mortality imposed on each species by size through time.
getFMort()	Three dimensional array (time x species x size)	Total fishing mortality on each species by size through time.
getFMortGear()	Four dimensional array (time x gear x species x size)	Fishing mortality on each species by each gear at size through time.
getYieldGear()	Three dimensional array (time x gear x species)	Total yield by gear and species through time.
getYield()	Two dimensional array (time x species)	Total yield of each species across all gears through time.

See Also

indicator_functions, plotting_functions

mizer documentation built on April 26, 2023, 5:12 p.m.