getHaploGroupProb: Get haplotype group probability

In mlPhaser: Multi-Locus Haplotype Phasing

Description

Combine probabilities across a haplotype group

Usage

  getHaploGroupProb(haploGroup, haploFreqs,
    method = "basic", returnLog = FALSE)

Arguments

haploGroup	A list of haplotypes. Only the names attribute is important.
haploFreqs	The frequencies of haplotypes as a named vector.
method	Only one method currently ("basic").
returnLog	Whether to output the combined probability as a natural log. Default=FALSE.

Details

Each haplotype might have a probability of being found. e.g. the population frequency. This function combines probabilities of a group of haplotypes

Value

A numeric likelihood representing the combined probability across a group.

mlPhaser documentation built on May 2, 2019, 7:59 a.m.