mnmer: mnmer

In mnmer: '(m,n)-mer' - A Simple Statistical Feature for Sequence Classification

mnmer

Description

Generates the feature matrix using conditional probability. As default, all sequences with N+IUPAC content higher 10% than are removed.

Usage

mnmer(seqs, m, n)

Arguments

seqs	DNAStringSet object seqs
m	Int value of m m
n	Int value of n n

Value

Outputs a dataframe

Examples

dir <-system.file("extdata", package="mnmer")
human <- readDNAStringSet(file.path(dir, "human_vir.fasta"))
human_02mer <- mnmer(human,2,0)

mnmer documentation built on May 31, 2023, 6:38 p.m.