readNumFASTA: readNumFASTA
In mnmer: '(m,n)-mer' - A Simple Statistical Feature for Sequence Classification
readNumFASTA R Documentation
readNumFASTA
Description
Load data in to the R system.
Usage
readNumFASTA(FASTAfile, size = 0, rand = FALSE, pni = 0.2)
Arguments
FASTAfile
Path to a multifasta file FASTAfile
size
Number of sequences to be loaded size
rand
Sequences choose mode random or not. TRUE or FALSE rand
pni
Cutoff percentage for maximum of non-ACTG bases in the sequences pni
Value
DNAStringSet object
Examples
dir <-system.file("extdata", package="mnmer")
human <-readNumFASTA((file.path(dir, "human_vir.fasta")), 10, TRUE, 0.50)
mnmer documentation built on May 31, 2023, 6:38 p.m.
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| readNumFASTA | R Documentation |
readNumFASTA
Description
Load data in to the R system.
Usage
readNumFASTA(FASTAfile, size = 0, rand = FALSE, pni = 0.2)
Arguments
FASTAfile |
Path to a multifasta file |
size |
Number of sequences to be loaded |
rand |
Sequences choose mode random or not. TRUE or FALSE |
pni |
Cutoff percentage for maximum of non-ACTG bases in the sequences |
Value
DNAStringSet object
Examples
dir <-system.file("extdata", package="mnmer")
human <-readNumFASTA((file.path(dir, "human_vir.fasta")), 10, TRUE, 0.50)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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