AIC.momentuHMM: AIC

In momentuHMM: Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models

AIC

Description

Akaike information criterion of momentuHMM model(s).

Usage

## S3 method for class 'momentuHMM'
AIC(object, ..., k = 2, n = NULL)

Arguments

object	A momentuHMM object.
...	Optional additional momentuHMM objects, to compare AICs of the different models. These can be passed as a list using the !!! operator (see rlang and example in AICweights).
k	Penalty per parameter. Default: 2 ; for classical AIC.
n	Optional sample size. If specified, the small sample correction AIC is used (i.e., AICc = AIC + kp(p+1)/(n-p-1) where p is the number of parameters).

Value

The AIC of the model(s) provided. If several models are provided, the AICs are output in ascending order.

Examples

# m is a momentuHMM object (as returned by fitHMM), automatically loaded with the package
m <- example$m
AIC(m)

## Not run: 
# HMM specifications
nbStates <- 2
stepDist <- "gamma"
angleDist <- "vm"
mu0 <- c(20,70)
sigma0 <- c(10,30)
kappa0 <- c(1,1)
stepPar0 <- c(mu0,sigma0)
anglePar0 <- c(-pi/2,pi/2,kappa0)
formula <- ~cov1+cov2
                
# example$m is a momentuHMM object (as returned by fitHMM), automatically loaded with the package
mod1 <- fitHMM(example$m$data,nbStates=nbStates,dist=list(step=stepDist,angle=angleDist),
                Par0=list(step=stepPar0,angle=anglePar0),
                formula=~1,estAngleMean=list(angle=TRUE))

Par0 <- getPar0(mod1,formula=formula)                 
mod2 <- fitHMM(example$m$data,nbStates=nbStates,dist=list(step=stepDist,angle=angleDist),
                Par0=Par0$Par,beta0=Par0$beta,
                formula=formula,estAngleMean=list(angle=TRUE))
                
AIC(mod1,mod2)

Par0nA <- getPar0(mod1,estAngleMean=list(angle=FALSE))                 
mod3 <- fitHMM(example$m$data,nbStates=nbStates,dist=list(step=stepDist,angle=angleDist),
                Par0=Par0nA$Par,beta0=Par0nA$beta,
                formula=~1)
 
AIC(mod1,mod2,mod3)

# add'l models provided as a list using the !!! operator                              
AIC(mod1, !!!list(mod2,mod3))

## End(Not run)

momentuHMM documentation built on Oct. 19, 2022, 1:07 a.m.