Files in momentuHMM
Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models

MD5
NEWS
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R R/getCovNames.R R/momentuHMMData.R R/plot_crwData.R R/getTrProbs.R R/plotStates.R R/turnAngle.R R/getParDM.R R/expandPar.R R/parDef.R R/formatmiSum.R R/logBeta.R R/stateFormulas.R R/circAngles.R R/timeInStates.R R/getPar.R R/simObsData.R R/get_retrySD.R R/AIC_momentuHMM.R R/plotPR.R R/nLogLike.R R/crwData.R R/allProbs.R R/crwHierData.R R/setStateNames.R R/AICweights.R R/plot_momentuHMM.R R/getboundInd.R R/viterbi.R R/exampleData.R R/plotSpatialCov.R R/plot_miHMM.R R/print_miHMM.R R/summary_momentuHMMData.R R/prepData.R R/crwHierSim.R R/getWorkBounds.R R/getXB.R R/formatRecharge.R R/momentuHierHMM.R R/setModelName.R R/checkInputs.R R/logAlpha.R R/rwrpcauchy.R R/get_ncmean.R R/print_miSum.R R/momentuHierHMMData.R R/HMMfits.R R/n2w.R R/momentuHMM_utils.R R/mixtureProbs.R R/moveData.R R/miHMM.R R/pseudoRes.R R/getSplineDM.R R/w2n.R R/checkPar0.R R/is_formula.R R/simHierData.R R/plotSat.R R/print_momentuHMM.R R/plot_miSum.R R/formatHierFormula.R R/printMessage.R R/formatHierHMM.R R/MIfitHMM.R R/crawlMerge.R R/get_inflation.R R/crwSim.R R/getPar0.R R/CIbeta.R R/plot_momentuHMMData.R R/momentuHMM.R R/distAngle.R R/miSum.R R/getDM.R R/stateProbs.R R/plotStationary.R R/get_fixParIndex.R R/CIreal.R R/MIpool.R R/stationary.R R/simData.R R/crawlWrap.R R/randomEffects.R R/moveHMMwrap.R R/fitHMM.R
src/Makevars
src/nLogLike.cpp
src/RcppExports.cpp
src/densities.h
src/combine.h
src/trMatrix.cpp
src/XBloop.cpp
src/getDM.cpp
src/momentuHMM_init.c
inst/CITATION
inst/doc/momentuHMM.pdf.asis
inst/doc/momentuHMM.pdf
build/vignette.rds
build/partial.rdb
vignettes/momentuHMM.pdf.asis
vignettes/examples/codExample.R vignettes/examples/greySealExample.R vignettes/examples/groupExample.R vignettes/examples/harbourSealExample.R vignettes/examples/northernFulmarExample.R vignettes/examples/landConstraintExample.R vignettes/examples/garterSnakeExample.R vignettes/examples/harborPorpoiseExample.R vignettes/examples/turtleExample_rw_mvnorm2.R vignettes/examples/hornSharkExample.R vignettes/examples/buffaloExample.R vignettes/examples/turtleExample.R vignettes/examples/elephantExample.R vignettes/examples/pilotWhaleExample.R vignettes/examples/nfsExample.R vignettes/examples/sesExample.R
data/forest.rda
data/example.rda
data/miExample.rda
man/miHMM.Rd man/pseudoRes.Rd man/viterbi.Rd man/logAlpha.Rd man/plot.momentuHMMData.Rd man/dnorm_rcpp.Rd man/crawlMerge.Rd man/crwData.Rd man/getDM_rcpp.Rd man/crwHierSim.Rd man/is.crwHierData.Rd man/plotSat.Rd man/dbeta_rcpp.Rd man/logBeta.Rd man/plot.miHMM.Rd man/dwrpcauchy_rcpp.Rd man/simObsData.Rd man/plot.miSum.Rd man/summary.momentuHMMData.Rd man/XBloop_rcpp.Rd man/prepData.Rd man/dweibull_rcpp.Rd man/is.crwData.Rd man/simData.Rd man/print.miHMM.Rd man/w2n.Rd man/dlnorm_rcpp.Rd man/checkPar0.Rd man/plotStationary.Rd man/is.crwSim.Rd man/is.momentuHMMData.Rd man/plot.momentuHMM.Rd man/dpois_rcpp.Rd man/getParDM.Rd man/expandPar.Rd man/randomEffects.Rd man/is.momentuHierHMMData.Rd man/getPar.Rd man/momentuHierHMMData.Rd man/print.miSum.Rd man/is.momentuHierHMM.Rd man/trMatrix_rcpp.Rd man/plotStates.Rd man/nLogLike.Rd man/distAngle.Rd man/is.HMMfits.Rd man/is.crwHierSim.Rd man/formatHierHMM.Rd man/crwSim.Rd man/parDef.Rd man/AICweights.Rd man/n2w.Rd man/setModelName.Rd man/momentuHMMData.Rd man/stationary.Rd man/is.momentuHMM.Rd man/dnbinom_rcpp.Rd man/MIfitHMM.Rd man/plotPR.Rd man/is.miSum.Rd man/HMMfits.Rd man/getTrProbs.Rd man/CIbeta.Rd man/dgamma_rcpp.Rd man/allProbs.Rd man/dlogis_rcpp.Rd man/momentuHMM.Rd man/is.miHMM.Rd man/CIreal.Rd man/dt_rcpp.Rd man/miSum.Rd man/crwHierData.Rd man/dexp_rcpp.Rd man/plotSpatialCov.Rd man/nLogLike_rcpp.Rd man/dcat_rcpp.Rd man/exampleData.Rd man/MIpool.Rd man/setStateNames.Rd man/mixtureProbs.Rd man/getCovNames.Rd man/circAngles.Rd man/fitHMM.Rd man/turnAngle.Rd man/plot.crwData.Rd man/stateProbs.Rd man/dbern_rcpp.Rd man/print.momentuHMM.Rd man/timeInStates.Rd man/getPar0.Rd man/momentuHierHMM.Rd man/crawlWrap.Rd man/AIC.momentuHMM.Rd man/dmvnorm_rcpp.Rd man/dvm_rcpp.Rd
momentuHMM documentation built on July 7, 2021, 9:06 a.m.