Files in momentuHMM
Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models
MD5
NEWS
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/getCovNames.R
R/momentuHMMData.R
R/plot_crwData.R
R/getTrProbs.R
R/plotStates.R
R/turnAngle.R
R/getParDM.R
R/expandPar.R
R/parDef.R
R/formatmiSum.R
R/logBeta.R
R/stateFormulas.R
R/circAngles.R
R/timeInStates.R
R/getPar.R
R/simObsData.R
R/get_retrySD.R
R/AIC_momentuHMM.R
R/plotPR.R
R/nLogLike.R
R/crwData.R
R/allProbs.R
R/crwHierData.R
R/setStateNames.R
R/AICweights.R
R/plot_momentuHMM.R
R/getboundInd.R
R/viterbi.R
R/exampleData.R
R/plotSpatialCov.R
R/plot_miHMM.R
R/print_miHMM.R
R/summary_momentuHMMData.R
R/prepData.R
R/crwHierSim.R
R/getWorkBounds.R
R/getXB.R
R/formatRecharge.R
R/momentuHierHMM.R
R/setModelName.R
R/checkInputs.R
R/logAlpha.R
R/rwrpcauchy.R
R/get_ncmean.R
R/print_miSum.R
R/momentuHierHMMData.R
R/HMMfits.R
R/n2w.R
R/momentuHMM_utils.R
R/mixtureProbs.R
R/moveData.R
R/miHMM.R
R/pseudoRes.R
R/getSplineDM.R
R/w2n.R
R/checkPar0.R
R/is_formula.R
R/simHierData.R
R/plotSat.R
R/print_momentuHMM.R
R/plot_miSum.R
R/formatHierFormula.R
R/printMessage.R
R/formatHierHMM.R
R/MIfitHMM.R
R/crawlMerge.R
R/get_inflation.R
R/crwSim.R
R/getPar0.R
R/CIbeta.R
R/plot_momentuHMMData.R
R/momentuHMM.R
R/distAngle.R
R/miSum.R
R/getDM.R
R/stateProbs.R
R/plotStationary.R
R/get_fixParIndex.R
R/CIreal.R
R/MIpool.R
R/stationary.R
R/simData.R
R/crawlWrap.R
R/randomEffects.R
R/moveHMMwrap.R
R/fitHMM.R
src/Makevars
src/nLogLike.cpp
src/RcppExports.cpp
src/densities.h
src/combine.h
src/trMatrix.cpp
src/XBloop.cpp
src/getDM.cpp
src/momentuHMM_init.c
inst/CITATION
inst/doc/momentuHMM.pdf.asis
inst/doc/momentuHMM.pdf
build/vignette.rds
build/partial.rdb
vignettes/momentuHMM.pdf.asis
vignettes/examples/codExample.R
vignettes/examples/greySealExample.R
vignettes/examples/groupExample.R
vignettes/examples/harbourSealExample.R
vignettes/examples/northernFulmarExample.R
vignettes/examples/landConstraintExample.R
vignettes/examples/garterSnakeExample.R
vignettes/examples/harborPorpoiseExample.R
vignettes/examples/turtleExample_rw_mvnorm2.R
vignettes/examples/hornSharkExample.R
vignettes/examples/buffaloExample.R
vignettes/examples/turtleExample.R
vignettes/examples/elephantExample.R
vignettes/examples/pilotWhaleExample.R
vignettes/examples/nfsExample.R
vignettes/examples/sesExample.R
data/forest.rda
data/example.rda
data/miExample.rda
man/miHMM.Rd
man/pseudoRes.Rd
man/viterbi.Rd
man/logAlpha.Rd
man/plot.momentuHMMData.Rd
man/dnorm_rcpp.Rd
man/crawlMerge.Rd
man/crwData.Rd
man/getDM_rcpp.Rd
man/crwHierSim.Rd
man/is.crwHierData.Rd
man/plotSat.Rd
man/dbeta_rcpp.Rd
man/logBeta.Rd
man/plot.miHMM.Rd
man/dwrpcauchy_rcpp.Rd
man/simObsData.Rd
man/plot.miSum.Rd
man/summary.momentuHMMData.Rd
man/XBloop_rcpp.Rd
man/prepData.Rd
man/dweibull_rcpp.Rd
man/is.crwData.Rd
man/simData.Rd
man/print.miHMM.Rd
man/w2n.Rd
man/dlnorm_rcpp.Rd
man/checkPar0.Rd
man/plotStationary.Rd
man/is.crwSim.Rd
man/is.momentuHMMData.Rd
man/plot.momentuHMM.Rd
man/dpois_rcpp.Rd
man/getParDM.Rd
man/expandPar.Rd
man/randomEffects.Rd
man/is.momentuHierHMMData.Rd
man/getPar.Rd
man/momentuHierHMMData.Rd
man/print.miSum.Rd
man/is.momentuHierHMM.Rd
man/trMatrix_rcpp.Rd
man/plotStates.Rd
man/nLogLike.Rd
man/distAngle.Rd
man/is.HMMfits.Rd
man/is.crwHierSim.Rd
man/formatHierHMM.Rd
man/crwSim.Rd
man/parDef.Rd
man/AICweights.Rd
man/n2w.Rd
man/setModelName.Rd
man/momentuHMMData.Rd
man/stationary.Rd
man/is.momentuHMM.Rd
man/dnbinom_rcpp.Rd
man/MIfitHMM.Rd
man/plotPR.Rd
man/is.miSum.Rd
man/HMMfits.Rd
man/getTrProbs.Rd
man/CIbeta.Rd
man/dgamma_rcpp.Rd
man/allProbs.Rd
man/dlogis_rcpp.Rd
man/momentuHMM.Rd
man/is.miHMM.Rd
man/CIreal.Rd
man/dt_rcpp.Rd
man/miSum.Rd
man/crwHierData.Rd
man/dexp_rcpp.Rd
man/plotSpatialCov.Rd
man/nLogLike_rcpp.Rd
man/dcat_rcpp.Rd
man/exampleData.Rd
man/MIpool.Rd
man/setStateNames.Rd
man/mixtureProbs.Rd
man/getCovNames.Rd
man/circAngles.Rd
man/fitHMM.Rd
man/turnAngle.Rd
man/plot.crwData.Rd
man/stateProbs.Rd
man/dbern_rcpp.Rd
man/print.momentuHMM.Rd
man/timeInStates.Rd
man/getPar0.Rd
man/momentuHierHMM.Rd
man/crawlWrap.Rd
man/AIC.momentuHMM.Rd
man/dmvnorm_rcpp.Rd
man/dvm_rcpp.Rd
