API for momentuHMM
Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models

Global functions
.onAttach Source code
AIC.momentuHMM Man page Source code
AICweights Man page
AICweights.miHMM Source code
AICweights.momentuHMM Source code
CI_angle Source code
CIbeta Man page Source code
CIreal Man page Source code
CIreal.default Man page Source code
CIreal.hierarchical Man page Source code
HMMfits Man page Source code
MIfitHMM Man page Source code
MIfitHMM.default Man page Source code
MIfitHMM.hierarchical Man page Source code
MIpool Man page Source code
RWdata Source code
XBloop_rcpp Man page Source code
allProbs Man page Source code
beta_parm_list Source code
cbindmean2 Source code
cbindmean3 Source code
cbindsigma2 Source code
cbindsigma3 Source code
checkCrawlArgs Source code
checkField Source code
checkHierFormula Source code
checkInputs Source code
checkNames Source code
checkPar0 Man page Source code
checkPar0.default Man page Source code
checkPar0.hierarchical Man page Source code
circAngles Man page Source code
comb Source code
combine Source code
cosinorCos Source code
cosinorSin Source code
crawlMerge Man page
crawlMerge.crwData Source code
crawlMerge.crwHierData Source code
crawlWrap Man page Source code
crw Source code
crwData Man page Source code
crwHierData Man page Source code
crwHierSim Man page Source code
crwSim Man page Source code
dbern_rcpp Man page Source code
dbeta_rcpp Man page Source code
dcat_rcpp Man page Source code
delta_bc Source code
dexp_rcpp Man page Source code
dgamma_rcpp Man page Source code
distAngle Man page Source code
dlnorm_rcpp Man page Source code
dlogis_rcpp Man page Source code
dmvnorm_rcpp Man page Source code
dnbinom_rcpp Man page Source code
dnorm_rcpp Man page Source code
dpois_rcpp Man page Source code
drw_mvnorm3 Source code
dt_rcpp Man page Source code
dvm_rcpp Man page Source code
dweibull_rcpp Man page Source code
dwrpcauchy_rcpp Man page Source code
example Man page
exampleData Man page
expandPar Man page Source code
expandRechargeFormulas Source code
find_intercept Source code
fitHMM Man page Source code
fitHMM.momentuHMMData Man page Source code
fitHMM.momentuHierHMMData Man page Source code
forest Man page
formatHierFormula Source code
formatHierHMM Man page Source code
formatRecharge Source code
formatmiSum Source code
getAIC Source code
getCovNames Man page Source code
getCovs Source code
getDM Source code
getDM_rcpp Man page Source code
getEllipse Source code
getFactorTerms Source code
getHierDist Source code
getPar Man page Source code
getPar0 Man page Source code
getPar0.default Man page Source code
getPar0.hierarchical Man page Source code
getPar0.miHMM Source code
getPar0.miSum Source code
getParDM Man page Source code
getParDM.default Man page Source code
getParDM.hierarchical Man page Source code
getProbs Source code
getRechargeParms Source code
getSplineDM Source code
getSplineFormula Source code
getTrProbs Man page Source code
getTrProbs.default Man page Source code
getTrProbs.hierarchical Man page Source code
getVC Source code
getWorkBounds Source code
getXB Source code
getZtilde Source code
get_CI Source code
get_CIwb Source code
get_TrProbs_recharge Source code
get_crwlag Source code
get_delta Source code
get_fixParIndex Source code
get_gamma Source code
get_gamma_recharge Source code
get_gradwb Source code
get_inflation Source code
get_mixProbs Source code
get_ncmean Source code
get_recharge Source code
get_retrySD Source code
get_stat Source code
get_stat_recharge Source code
getboundInd Source code
hierStateProbs Source code
hierViterbi Source code
installDataTree Source code
is.HMMfits Man page Source code
is.crwData Man page Source code
is.crwHierData Man page Source code
is.crwHierSim Man page Source code
is.crwSim Man page Source code
is.formula Source code
is.miHMM Man page Source code
is.miSum Man page Source code
is.momentuHMM Man page Source code
is.momentuHMMData Man page Source code
is.momentuHierHMM Man page Source code
is.momentuHierHMMData Man page Source code
langevin Source code
logAlpha Man page Source code
logBeta Man page Source code
mapBounds Source code
mapCons Source code
mapHier Source code
mapPar Source code
miExample Man page
miHMM Man page Source code
miSum Man page Source code
mi_parm_list Source code
mixtureProbs Man page Source code
mlogit Source code
momentuHMM Man page Source code
momentuHMMData Man page Source code
momentuHierHMM Man page Source code
momentuHierHMMData Man page Source code
moveHMMwrap Source code
muffleRNGwarning Source code
n2w Man page Source code
n2wDM Source code
nLogLike Man page Source code
nLogLike_rcpp Man page Source code
nbHierStates Source code
newFormulas Source code
nw2w Source code
opt Source code
opt12 Source code
parDef Man page Source code
parm_list Source code
plot.crwData Man page Source code
plot.crwHierData Man page Source code
plot.miHMM Man page Source code
plot.miSum Man page Source code
plot.momentuHMM Man page Source code
plot.momentuHMMData Man page Source code
plot.momentuHierHMMData Man page Source code
plotCall Source code
plotHistMVN Source code
plotPR Man page Source code
plotSat Man page Source code
plotSpatialCov Man page Source code
plotStates Man page Source code
plotStationary Man page
plotStationary.miHMM Source code
plotStationary.miSum Source code
plotStationary.momentuHMM Source code
plotTPM Source code
prepData Man page Source code
prepData.default Man page Source code
prepData.hierarchical Man page Source code
print.miHMM Man page Source code
print.miSum Man page Source code
print.momentuHMM Man page Source code
print.momentuHMM.version Source code
print.momentuHierHMM Man page Source code
printMessage Source code
probCI Source code
progBar Source code
pseudoRes Man page Source code
quietCrawl Source code
radian Source code
randomEffects Man page Source code
recharge Source code
setModelName Man page
setModelName.HMMfits Source code
setModelName.miHMM Source code
setModelName.momentuHMM Source code
setStateNames Man page
setStateNames.HMMfits Source code
setStateNames.miHMM Source code
setStateNames.miSum Source code
setStateNames.momentuHMM Source code
simData Man page Source code
simHierData Man page Source code
simObsData Man page Source code
simObsData.momentuHMMData Man page Source code
simObsData.momentuHierHMMData Man page Source code
splineCheck Source code
statPlot Source code
stateFormulas Source code
stateProbs Man page Source code
stationary Man page
stationary.miHMM Source code
stationary.miSum Source code
stationary.momentuHMM Source code
summary.momentuHMMData Man page Source code
summary.momentuHierHMMData Man page Source code
timeInStates Man page Source code
timeInStates.HMMfits Man page Source code
timeInStates.miHMM Man page
timeInStates.momentuHMM Man page Source code
trMatrix_rcpp Man page Source code
turnAngle Man page Source code
viterbi Man page Source code
w2n Man page Source code
w2nDM Source code
w2nDMangle Source code
w2wn Source code
momentuHMM documentation built on July 7, 2021, 9:06 a.m.