Description Usage Arguments Details Value Note Author(s)
This function computes the intra-row correlation and applied a threshold to compute the connections of each row. A connectivity vector is returned.
1 | connectivity(prof, method = "pearson", th = 0, soft = FALSE)
|
prof |
: a profile matrix. This data is used to compute correlations. |
method |
: the correlation method, default = pearson. |
th |
: default 0, if >0 than this threshold will be applied to compute a hard threholded connectivity. |
soft |
: default = FALSE, if TRUE and when th > 0, the connectivity is computed as the soft threholded, sum of correlations above the threshold |
connectivity
a vector of connectivity
this connectivity does not use a hard thresholding but is based on a total correlation score
Emmanuelle le Chatelier & Edi Prifti
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