Description Usage Arguments Details Value Author(s)
This function extracts the profiles from a gene profile matrix of a group of genes or a list of groups of genes. It can also restrict the size of the result
1 2 | extractProfiles(genebag, data, size.max = 15000, size.min = 1,
silent = TRUE)
|
genebag |
: vector or list of gene_ids |
data |
: raw count or frequency matrix with genes_ids as rawnames |
size.max |
: default 15000, maximum number of profiles to be extracted |
size.min |
: default 1, the minimal size threshold above which a group of genes is selected. This is used to extract multiple profiles and filtering the list with a minimal number of genes |
silent |
: default TRUE, detailling and following computation progress |
extractProfiles
a matrix or a list of profile matrixes
Edi Prifti & Emmanuelle Le Chatelier
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