extractProfiles

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Description

This function extracts the profiles from a gene profile matrix of a group of genes or a list of groups of genes. It can also restrict the size of the result

Usage

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extractProfiles(genebag, data, size.max = 15000, size.min = 1,
  silent = TRUE)

Arguments

genebag

: vector or list of gene_ids

data

: raw count or frequency matrix with genes_ids as rawnames

size.max

: default 15000, maximum number of profiles to be extracted

size.min

: default 1, the minimal size threshold above which a group of genes is selected. This is used to extract multiple profiles and filtering the list with a minimal number of genes

silent

: default TRUE, detailling and following computation progress

Details

extractProfiles

Value

a matrix or a list of profile matrixes

Author(s)

Edi Prifti & Emmanuelle Le Chatelier

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