Description Usage Arguments Details Value Note Author(s)
This function takes a matrix with raw reads counts and computes the number of genes at a given downsizing level a given number of times.
1 | downsizeGC(data, level = 1.1e+07, repetitions = 30, silent = FALSE)
|
data |
: raw read count matrix with gene_ids as rownames |
level |
: default 11e6, the downsizing level number of reads to be selected randomly. |
repetitions |
: default 30, the number of times the drawing is performed. Usually 30 or 10 to speed things out |
silent |
: default is FALSE prints the status of downsizing |
downsizeGC
a matrix containing in rows a vector for each repetition and in columns the number of downsized genes for each sample
if the downsizing level is higher than the number of reads for a given sample than the result will be NA
Edi Prifti & Emmanuelle Le Chatelier
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