identify_gaps: List gaps

In motifr: Motif Analysis in Multi-Level Networks

Description

List gaps ordered by contribution to a motif. This is a list of ties together with the number of motifs of a given class the dyad would generate by being added to the network.

Usage

identify_gaps(net, motif, lvl_attr = c("sesType"), level = -1)

Arguments

net	network object
motif	motif identifier
lvl_attr	character vector specifying the attribute name where level information is stored in net.
level	level of the dyads which shall be considered, or -1 if the level shall be determined automatically.

Details

The level parameter determines on which level of the network gaps are analysed. Per default, when “level = -1“, the first level in the motif which provides exactly two nodes is selected. Use this parameter to specify a level manually. The procedure for determining the level is the same as for the Actor's Choice Model, cf. vignette.

Note that this only works for undirected graphs. Regardless of whether the input graph is directed it is treated as undirected graph.

Value

data frame with three columns, listing edges and their contribution to motifs described by the motif identifier in descending order

Examples

## Not run: 
head(identify_gaps(ml_net, motif = "1,2[II.C]"))

## End(Not run)

motifr documentation built on Dec. 15, 2020, 5:23 p.m.