plot_gaps: Plot gaps in network visualisation

In motifr: Motif Analysis in Multi-Level Networks

Description

Note that this only works for undirected graphs. Regardless of whether the input graph is directed it is treated as undirected graph.

Usage

plot_gaps(
  net,
  motif,
  lvl_attr = c("sesType"),
  level = -1,
  cutoff = 2,
  subset_graph = "none",
  ...
)

Arguments

net	Statnet network object
motif	Motif to explore gaps in for
lvl_attr	Node attribute specifying level information
level	Focal level for gap analysis
cutoff	Cut-off point in contributions of an edge to the number of motifs above which to analyse gaps
subset_graph	Whether to subset the graph to only show nodes involved in gaps. One of "none" (no subset, default), "partial" (only focal level is subset) or "focal" (only focal level shown)
...	list of additional parameters to be passed to plotting function (see motifr::plot_mnet), e.g. label = TRUE

Value

A plot of gaps, sized by weight in a multilevel network

Examples

## Not run: 
plot_gaps(ml_net, "1,2[II.C]", level = -1)
plot_gaps(ml_net, "1,2[II.C]",
  level = -1,
  subset_graph = "focal", cutoff = 4, label = TRUE
)
plot_gaps(ml_net, "1,2[II.C]",
  level = -1,
  subset_graph = "partial", cutoff = 4, label = TRUE
)

## End(Not run)

motifr documentation built on Dec. 15, 2020, 5:23 p.m.