Description Usage Arguments Value Author(s) References Examples
Wrapper for the ape
function drop.tip
that preserves the number of nodes affecting each branch. For use with the psi
and multipsi
models.
1 | dropTipPartial(phy, tip)
|
phy |
Phylogenetic tree in |
tip |
A vector of mode numeric or character specifying the tips to delete, to be passed to |
Phylogenetic tree in phylo
format, with an added element Shid
, a vector of numbers of observed but "missing" speciation events per branch, in the same order as the branches in the phylo
object
Travis Ingram
Ingram, T. 2011. Speciation along a depth gradient in a marine adaptive radiation. Proc. R. Soc. B 278: 613-618.
1 2 3 4 5 6 | ## Read in phylogeny and data from Thomas et al. (2009)
data(anolis.tree)
data(anolis.data)
## identify tips to drop
tips.to.go <- anolis.tree$tip.label[1:30]
dropTipPartial(phy=anolis.tree, tip=tips.to.go)
|
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