traitData.plot: plot a univariate continuous trait data on a phylogeny

In motmot.2.0: Models of Trait Macroevolution on Trees

Description

Plots a phylogeny with lines representing the value of a continuous trait

Usage

traitData.plot(y, phy, col.label = "red", col.tree = "black",
  cex.plot = 0.7, include.hist = F)

Arguments

y	A matrix of trait values with taxon names as rownames.
phy	An object of class "phylo" (see ape package).
col.label	colour labels for the traits at the tips and in the histogram
col.tree	colour for the edge labels on the tree
cex.plot	Numeric. The size of labels for the histogram axis labels
include.hist	Logical. Include a histrogram alongside the plot of the tree?

Value

A plot with the trait values shown at the tips, and a histrogram of the trait values

Author(s)

Mark Puttick

Examples

data(anolis.tree)
data(anolis.data)
attach(anolis.data)
male.length <- matrix(Male_SVL, dimnames=list(rownames(anolis.data)))
sortedData <- sortTraitData(anolis.tree, male.length)
phy <- sortedData$phy
male.length <- sortedData$trait
traitData.plot(y=male.length, phy)

motmot.2.0 documentation built on May 1, 2019, 9:22 p.m.