removeNonBin: remove species occuring before time in the past (internal...
In motmot.2.0: Models of Trait Macroevolution on Trees
Description
Usage
Arguments
Value
Author(s)
References
Description
removes tips and lineages after a time in the past
Usage
1
removeNonBin(phy, traitData, keepByTime = 0, tol = 1e-08)
Arguments
phy
An object of class "phylo" (see ape package).
traitData
data associated with the species
keepByTime
an age at which to keep preserve tips before the present (time = 0)
tol
edge length precision in time cut (default = 1e-08)
Value
a list with the prunedPhylogeny and a prunedData
Author(s)
Mark Puttick
References
Puttick, M. N., Kriwet, J., Wen, W., Hu, S., Thomas, G. H., & Benton, M. J. (2017). Body length of bony fishes was not a selective factor during the biggest mass extinction of all time. Palaeontology, 60, 727-741.
motmot.2.0 documentation built on May 1, 2019, 9:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) References
Description
removes tips and lineages after a time in the past
Usage
1 | removeNonBin(phy, traitData, keepByTime = 0, tol = 1e-08)
|
Arguments
phy |
An object of class "phylo" (see ape package). |
traitData |
data associated with the species |
keepByTime |
an age at which to keep preserve tips before the present (time = 0) |
tol |
edge length precision in time cut (default = 1e-08) |
Value
a list with the prunedPhylogeny and a prunedData
Author(s)
Mark Puttick
References
Puttick, M. N., Kriwet, J., Wen, W., Hu, S., Thomas, G. H., & Benton, M. J. (2017). Body length of bony fishes was not a selective factor during the biggest mass extinction of all time. Palaeontology, 60, 727-741.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.