internalOperators: Internal operators for mpMap2

In mpMap2: Genetic Analysis of Multi-Parent Recombinant Inbred Lines

Description

Internal operators, used to modify mpcross objects.

Usage

## S4 method for signature 'rawSymmetricMatrix,index,index,logical'
x[i, j, ..., drop = TRUE]

## S4 method for signature 'rawSymmetricMatrix,index,index,missing'
x[i, j, ..., drop = TRUE]

## S4 method for signature 'rawSymmetricMatrix,missing,missing,missing'
x[i, j, ..., drop = TRUE]

## S4 method for signature 'rawSymmetricMatrix,matrix,missing,missing'
x[i, j, ..., drop = TRUE]

## S4 method for signature 'geneticData,assignFounderPattern'
e1 + e2

## S4 method for signature 'mpcross,assignFounderPattern'
e1 + e2

## S4 method for signature 'mpcrossMapped,assignFounderPattern'
e1 + e2

## S4 method for signature 'geneticData,assignFounderPatternPrototype'
e1 + e2

## S4 method for signature 'mpcross,assignFounderPatternPrototype'
e1 + e2

## S4 method for signature 'mpcrossMapped,assignFounderPatternPrototype'
e1 + e2

## S4 method for signature 'geneticData,biparentalDominant'
e1 + e2

## S4 method for signature 'mpcross,biparentalDominant'
e1 + e2

## S4 method for signature 'geneticData,fixedNumberOfFounderAlleles'
e1 + e2

## S4 method for signature 'mpcross,fixedNumberOfFounderAlleles'
e1 + e2

## S4 method for signature 'geneticData,multiparentSNP'
e1 + e2

## S4 method for signature 'mpcross,multiparentSNP'
e1 + e2

## S4 method for signature 'geneticData,multiparentSNPPrototype'
e1 + e2

## S4 method for signature 'mpcross,multiparentSNPPrototype'
e1 + e2

## S4 method for signature 'mpcross,removeHets'
e1 + e2

## S4 method for signature 'geneticData,normalPhenotype'
e1 + e2

## S4 method for signature 'mpcross,normalPhenotype'
e1 + e2

Arguments

x	object from which to extract element(s)
i, j	indices specifying elements to extract or replace
...	Currently unused
drop	If TRUE the result is coerced to the lowest possible dimension
e1	Object one
e2	Object two

Details

These operators are used to combine objects in order to apply a function. For example, e1 + biparentalDominant() returns the biparental design e1, with all markers converted to dominant markers. Consult the documentation on the individual functions, rather than this list of operators.

Value

Various. Not for external use.

Modified version of the input object. The class of the output depends on the class of the input.

mpMap2 documentation built on Sept. 13, 2020, 5:17 p.m.