pedigree-class: Pedigree class

In mpMap2: Genetic Analysis of Multi-Parent Recombinant Inbred Lines

Description

This class describes a pedigree for an experimental design. Although package mpMap2 only allows for the analysis of pedigrees corresponding to multi-parent crosses, this pedigree class can describe arbitrary experimental designs.

Slots

mother

The index within the pedigree of the mother of this individual

father

The index within the pedigree of the father of this individual

lineName

The name of this individual

selfing

A value indicating whether analysis of an experiment using this pedigree should assume infinite generations of selfing. A value of "infinite" indicates infinite generations of selfing, and a value of "finite" indicates finite generations of selfing.

warnImproperFunnels

A value indicating whether to warn the user about funnels with repeated founders.

See Also

pedigree-class, simulateMPCross, detailedPedigree-class, rilPedigree, f2Pedigree, fourParentPedigreeRandomFunnels, fourParentPedigreeSingleFunnel, eightParentPedigreeRandomFunnels, eightParentPedigreeSingleFunnel, sixteenParentPedigreeRandomFunnels

mpMap2 documentation built on Sept. 13, 2020, 5:17 p.m.