This class describes a pedigree for an experimental design. Although package mpMap2 only allows for the analysis of pedigrees corresponding to multi-parent crosses, this pedigree class can describe arbitrary experimental designs.
mother
The index within the pedigree of the mother of this individual
father
The index within the pedigree of the father of this individual
lineName
The name of this individual
selfing
A value indicating whether analysis of an experiment using this pedigree should assume infinite generations of selfing. A value of "infinite"
indicates infinite generations of selfing, and a value of "finite"
indicates finite generations of selfing.
warnImproperFunnels
A value indicating whether to warn the user about funnels with repeated founders.
pedigree-class
, simulateMPCross
, detailedPedigree-class
, rilPedigree
, f2Pedigree
, fourParentPedigreeRandomFunnels
, fourParentPedigreeSingleFunnel
, eightParentPedigreeRandomFunnels
, eightParentPedigreeSingleFunnel
, sixteenParentPedigreeRandomFunnels
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