DoData: process raw data
In mrMLM: Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for GWAS

DoData

R Documentation

process raw data

Description

process raw data for later use

Usage

DoData(genRaw,Genformat,pheRaw1q,kkRaw,psmatrixRaw,covmatrixRaw,trait,
type,PopStrType)

Arguments

`genRaw`	raw genotype matrix.
`Genformat`	genotype format.
`pheRaw1q`	raw phenotype matrix.
`kkRaw`	raw kinship matrix.
`psmatrixRaw`	raw population structure matrix.
`covmatrixRaw`	raw covariate matrix.
`trait`	which trait to analysis.
`type`	which type to transform.
`PopStrType`	The type of population structure.

Author(s)

Zhang Ya-Wen, Wang Jing-Tian, Li Pei, Zhang Yuan-Ming
Maintainer: Yuan-Ming Zhang<soyzhang@mail.hzau.edu.cn>

Examples

G1=data(Gen)
P1=data(Phe)
readraw=ReadData(fileGen=Gen,filePhe=Phe,fileKin=NULL,filePS =NULL,
fileCov=NULL,Genformat=1)
result=DoData(readraw$genRaw,Genformat=1,readraw$pheRaw1q,readraw$kkRaw,
readraw$psmatrixRaw,readraw$covmatrixRaw,trait=1,type=2,PopStrType=NULL)

mrMLM documentation built on March 27, 2022, 9:05 a.m.