FASTmrMLM | R Documentation |
FAST multi-locus random-SNP-effect Mixed Linear Model
FASTmrMLM(gen,phe,outATCG,genRaw,kk,psmatrix,svpal,svrad,svmlod,Genformat,CLO)
gen |
genotype matrix. |
phe |
phenotype matrix. |
outATCG |
genotype for code 1. |
genRaw |
raw genotype. |
kk |
kinship matrix. |
psmatrix |
population structure matrix. |
svpal |
Critical P-value for selecting variable. |
svrad |
Search Radius in search of potentially associated QTN. |
svmlod |
Critical LOD score for significant QTN. |
Genformat |
Format for genotypic codes. |
CLO |
number of CPU. |
Zhang Ya-Wen, Wang Jing-Tian, Li Pei, Zhang Yuan-Ming
Maintainer: Yuan-Ming Zhang<soyzhang@mail.hzau.edu.cn>
G1=data(Gen) P1=data(Phe) Readraw=ReadData(fileGen=Gen,filePhe=Phe,fileKin=NULL,filePS =NULL, Genformat=1) InputData=inputData(readraw=Readraw,Genformat=1,method="FASTmrMLM",trait=1) result=FASTmrMLM(InputData$doMR$gen,InputData$doMR$phe, InputData$doMR$outATCG,InputData$doMR$genRaw, InputData$doMR$kk,InputData$doMR$psmatrix,0.01,svrad=20, svmlod=3,Genformat=1,CLO=1)
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