pKWmEB | R Documentation |
Kruskal-Wallis test with empirical Bayes under polygenic background control
pKWmEB(gen,phe,outATCG,genRaw,kk,psmatrix,svpal,svmlod,Genformat,CLO)
gen |
genotype matrix. |
phe |
phenotype matrix. |
outATCG |
genotype for code 1. |
genRaw |
raw genotype. |
kk |
kinship matrix. |
psmatrix |
population structure matrix. |
svpal |
Critical P-value for selecting variable. |
svmlod |
Critical LOD score for significant QTN. |
Genformat |
Format for genotypic codes. |
CLO |
number of CPU. |
Zhang Ya-Wen, Wang Jing-Tian, Li Pei, Zhang Yuan-Ming
Maintainer: Yuan-Ming Zhang<soyzhang@mail.hzau.edu.cn>
G1=data(Gen) P1=data(Phe) Readraw=ReadData(fileGen=Gen,filePhe=Phe,fileKin=NULL,filePS =NULL, Genformat=1) InputData=inputData(readraw=Readraw,Genformat=1,method="pKWmEB",trait=1) result=pKWmEB(InputData$doMR$gen,InputData$doMR$phe,InputData$doMR$outATCG, InputData$doMR$genRaw,InputData$doMR$kk,InputData$doMR$psmatrix, 0.05,svmlod=3,Genformat=1,CLO=1)
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