getFinalSizeDistEscape: Estimate the distribution of final outbreak sizes by group...

In multigroup.vaccine: Analyze Outbreak Models of Multi-Group Populations with Vaccination

Estimate the distribution of final outbreak sizes by group using a hybrid model: stochastic simulations for smaller-sized outbreaks and deterministic ordinary differential equation model for "escaped" outbreaks

Description

Estimate the distribution of final outbreak sizes by group using a hybrid model: stochastic simulations for smaller-sized outbreaks and deterministic ordinary differential equation model for "escaped" outbreaks

Usage

getFinalSizeDistEscape(
  n,
  transmrates,
  recoveryrate,
  popsize,
  initR,
  initI,
  initV
)

Arguments

n	the number of simulations to run
transmrates	matrix of group-to-group (column-to-row) transmission rates
recoveryrate	inverse of mean infectious period
popsize	the population size of each group
initR	initial number of each group already infected and removed (included in size result)
initI	initial number of each group infectious
initV	initial number of each group vaccinated

Value

a matrix with the final number infected from each group (column) in each simulation (row)

Examples

getFinalSizeDistEscape(n = 10, transmrates = matrix(0.2, 2 ,2), recoveryrate = 0.3,
popsize = c(100, 150), initR = c(0, 0), initI = c(0, 1), initV = c(10, 10))

multigroup.vaccine documentation built on Sept. 19, 2026, 1:06 a.m.