getFinalSizeODE: Calculate outbreak final size, the total number of infections...

In multigroup.vaccine: Analyze Outbreak Models of Multi-Group Populations with Vaccination

Calculate outbreak final size, the total number of infections in each group, by numerically solving the multi-group ordinary differential equation

Description

Calculate outbreak final size, the total number of infections in each group, by numerically solving the multi-group ordinary differential equation

Usage

getFinalSizeODE(transmrates, recoveryrate, popsize, initR, initI, initV)

Arguments

transmrates	matrix of group-to-group (column-to-row) transmission rates
recoveryrate	inverse of mean infectious period
popsize	the population size of each group
initR	initial number of each group already infected and removed (included in final size)
initI	initial number of each group infectious
initV	initial number of each group vaccinated

Value

vector of final sizes (number of infected over whole outbreak) for each group

Examples

getFinalSizeODE(transmrates = matrix(0.2, 2 ,2), recoveryrate = 0.3,
popsize = c(100, 150), initR = c(0, 0), initI = c(0, 1), initV = c(10, 10))

multigroup.vaccine documentation built on Sept. 19, 2026, 1:06 a.m.