muma: Metabolomics Univariate and Multivariate Analysis

Preprocessing of high-throughput data (normalization and scalings); Principal Component Analysis with help tool for choosing best-separating principal components and automatic testing for outliers; automatic univariate analysis for parametric and non-parametric data, with generation of specific reports (volcano and box plots); partial least square discriminant analysis (PLS-DA); orthogonal partial least square discriminant analysis (OPLS-DA); Statistical Total Correlation Spectroscopy (STOCSY); Ratio Analysis Nuclear Magnetic Resonance (NMR) Spectroscopy (RANSY).

Install the latest version of this package by entering the following in R:
install.packages("muma")
AuthorEdoardo Gaude, Francesca Chignola, Dimitrios Spiliotopoulos, Silvia Mari, Andrea Spitaleri and Michela Ghitti
Date of publication2012-12-03 18:20:37
MaintainerEdoardo gaude <egaude541@gmail.com>
LicenseGPL-2
Version1.4

View on CRAN

Functions

box.plot Man page
chose.driver Man page
col.pvalues Man page
explore.data Man page
MetaBc Man page
muma Man page
muma-package Man page
oplsda Man page
ostocsy Man page
outlier Man page
Plot.pca Man page
Plot.pca.loading Man page
Plot.pca.pvalues Man page
Plot.pca.score Man page
Plot.plsda Man page
plsda Man page
pvalues Man page
ransy Man page
shapiro Man page
stocsy Man page
stocsy.1d Man page
univariate Man page
volcano Man page
welch Man page
wmw Man page
work.dir Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.