mc_calc_vwc: Conversion of raw TMS soil moisture values to volumetric...

In myClim: Microclimatic Data Processing

Conversion of raw TMS soil moisture values to volumetric water content (VWC)

Description

This function creates a new virtual sensor on the locality within the myClim data object. Function converts the raw TMS soil moisture (scaled TDT signal) to volumetric water content (VWC).

Usage

mc_calc_vwc(
  data,
  moist_sensor = mc_const_SENSOR_TMS_moist,
  temp_sensor = mc_const_SENSOR_TMS_T1,
  output_sensor = "VWC_moisture",
  soiltype = "universal",
  localities = NULL,
  ref_t = mc_const_CALIB_MOIST_REF_T,
  acor_t = mc_const_CALIB_MOIST_ACOR_T,
  wcor_t = mc_const_CALIB_MOIST_WCOR_T,
  frozen2NA = TRUE
)

Arguments

data	cleaned myClim object see myClim-package
moist_sensor	name of soil moisture sensor to be converted from TMS moisture values to volumetric water content (default "TMS_moist") see names(mc_data_sensors). Soil moisture sensor must be in moisture_raw physical units see names(mc_data_physical).
temp_sensor	name of soil temperature sensor (default "TMS_T1") see names(mc_data_sensors). Temperature sensor must be in T_C physical units.
output_sensor	name of new virtual sensor with VWC values (default "VWC_moisture")
soiltype	Either character corresponding to one of soiltype from mc_data_vwc_parameters (default "universal"), or a list with parameters a, b and c provided by the user as a list(a=Value_1, b=Value_2, c=Value_3).
localities	list of locality_ids used for calculation; if NULL then all localities are used (default NULL)
ref_t	(default 24)
acor_t	(default 1.91132689118083) correction parameter for temperature drift in the air, see mc_calib_moisture()
wcor_t	(default 0.64108) correction parameter for temperature drift in the water, see mc_calib_moisture()
frozen2NA	if TRUE then VWC values are set to NA when the soil temperature is below 0 °C (default TRUE)

Details

This function is suitable for TOMST TMS loggers measuring soil moisture in raw TMS units. The raw TMS units represents inverted and numerically rescaled (1-4095) electromagnetic signal from the moisture sensor working on Time Domain Transmission principle (Wild et al. 2019). For TMS4 logger, the typical raw TMS moisture values range from cca 115 units in dry air to cca 3635 units in distilled water - see mc_calib_moisture.

Raw TMS moisture values can be converted to the soil volumetric water content with calibration curves. The function provides several experimentally derived calibration curves which were developped at reference temperature. To account for the difference between reference and actual temperature, the function uses actual soil temperature values measured by TMS_T1 soil temperature sensor.

The default calibration curve is "universal", which was designed for mineral soils (see Kopecký et al. 2021). Specific calibration curves were developed for several soil types (see Wild et al. 2019) and the user can choose one of these or can define its own calibration - see mc_data_vwc_parameters

Currently available calibration curves are: sand, loamy sand A, loamy sand B, sandy loam A, sandy loam B, loam, silt loam, peat, water, universal, sand TMS1, loamy sand TMS1, silt loam TMS1. For details see mc_data_vwc_parameters.

It is also possible to define a new calibarion function with custom parameters a, b and c. These can be derived e.g. from TOMST TMS Calibr utility after entering custom ratio of clay, silt, sand.

Warning: TOMST TMS Calibr utility was developed for TMS3 series of TMS loggers, which have different range of raw soil moisture values than TMS4 series.

The function by default replace the moisture records in frozen soils with NA (param frozen2NA), because the TMS soil moisture sensor was not designed to measure in frozen soils and the returned values are thus not comparable with values from non-frozen soil.

Value

myClim object same as input but with added virtual VWC moisture sensor

References

Wild, J., Kopecký, M., Macek, M., Šanda, M., Jankovec, J., Haase, T. (2019) Climate at ecologically relevant scales: A new temperature and soil moisture logger for long-term microclimate measurement. Agriculture and Forest Meteorology 268, 40-47. https://doi.org/10.1016/j.agrformet.2018.12.018

Kopecký, M., Macek, M., Wild, J. (2021) Topographic Wetness Index calculation guidelines based on measured soil moisture and plant species composition. Science of the Total Environment 757, 143785. https://doi.org/10.1016/j.scitotenv.2020.143785

See Also

mc_data_vwc_parameters

Examples

data1 <- mc_calc_vwc(mc_data_example_agg, soiltype="sand", localities="A2E32")
data2 <- mc_calc_vwc(mc_data_example_agg, localities="A2E32",
                     soiltype=list(a=-3.00e-09, b=0.000161192, c=-0.109956505))

myClim documentation built on Oct. 21, 2024, 5:07 p.m.