API for neotoma2
Working with the Neotoma Paleoecology Database

Global functions
$,chronologies-method Man page
$,chronology-method Man page
$,collunit-method Man page
$,collunits-method Man page
$,contact-method Man page
$,contacts-method Man page
$,dataset-method Man page
$,datasets-method Man page
$,publication-method Man page
$,sample-method Man page
$,samples-method Man page
$,site-method Man page
$,sites-method Man page
$,speleothem-method Man page
$,speleothems-method Man page
$,taxa-method Man page
$,taxon-method Man page
$<-,chronology-method Man page
$<-,collunit-method Man page
$<-,dataset-method Man page
$<-,site-method Man page
$<-,speleothem-method Man page
$<-,taxon-method Man page
%>% Man page
[ Man page
[,collunits,numeric-method Man page
[,datasets,numeric-method Man page
[,site,character-method Man page
[,site,numeric-method Man page
[,sites,numeric-method Man page
[,speleothems,numeric-method Man page
[,taxa,numeric-method Man page
[<-,collunit,character-method Man page
[<-,collunit,numeric-method Man page
[<-,dataset,character-method Man page
[<-,dataset,numeric-method Man page
[<-,sample,character-method Man page
[<-,site,character-method Man page
[<-,site,numeric-method Man page
[<-,speleothem,character-method Man page
[<-,speleothem,numeric-method Man page
[<-,taxon,character-method Man page
[<-,taxon,numeric-method Man page
[[,chronologies,numeric-method Man page
[[,collunits,numeric-method Man page
[[,contacts,numeric-method Man page
[[,datasets,numeric-method Man page
[[,publications,numeric-method Man page
[[,samples,numeric-method Man page
[[,sites,numeric-method Man page
[[,speleothems,numeric-method Man page
[[,taxa,numeric-method Man page
[[<-,collunits-method Man page
[[<-,datasets-method Man page
[[<-,publications-method Man page
[[<-,samples-method Man page
[[<-,sites-method Man page
[[<-,speleothems-method Man page
[[<-,taxa-method Man page
add_chronology Man page
add_chronology,collunit,chronology,data.frame-method Man page
add_chronology,collunit-method Man page
as.data.frame Man page
as.data.frame,authors-method Man page
as.data.frame,chronologies-method Man page
as.data.frame,chronology-method Man page
as.data.frame,collunit-method Man page
as.data.frame,collunits-method Man page
as.data.frame,contact-method Man page
as.data.frame,contacts-method Man page
as.data.frame,dataset-method Man page
as.data.frame,datasets-method Man page
as.data.frame,publication-method Man page
as.data.frame,publications-method Man page
as.data.frame,site-method Man page
as.data.frame,sites-method Man page
as.data.frame,speleothem-method Man page
as.data.frame,speleothems-method Man page
as.data.frame,taxa-method Man page
as.data.frame,taxon-method Man page
author-class Man page
author_classes Man page
authors-class Man page
build_chron Source code
build_collunits Source code
build_dataset Source code
build_sample Source code
build_site Source code
build_specimen Source code
build_speleothem Source code
c Man page
c,chronologies-method Man page
c,collunits-method Man page
c,contact-method Man page
c,contacts-method Man page
c,datasets-method Man page
c,missingOrNULL-method Man page
c,publications-method Man page
c,samples-method Man page
c,sites-method Man page
c,speleothems-method Man page
c,taxa-method Man page
cash Man page
cash,collunit-method Man page
cash,collunits-method Man page
cash,contact-method Man page
cash,contacts-method Man page
cash,dataset-method Man page
cash,datasets-method Man page
cash,publication-method Man page
cash,sample-method Man page
cash,samples-method Man page
cash,speleothem-method Man page
cash,speleothems-method Man page
cash,taxa-method Man page
cash,taxon-method Man page
cash-set Man page
cash-set,collunit-method Man page
cash-set,dataset-method Man page
cash-set,speleothem-method Man page
cash-set,taxon-method Man page
check_contacts Man page Source code
check_contacts.contacts Man page Source code
chroncontrols Man page
chroncontrols,site-method Man page
chroncontrols,sites-method Man page
chronologies Man page
chronologies,collunit-method Man page
chronologies,collunits-method Man page
chronologies,site-method Man page
chronologies,sites-method Man page
chronologies-class Man page
chronologies_classes Man page
chronology-class Man page
cite_data Man page
cite_data,NULL-method Man page
cite_data,site-method Man page
cite_data,sites-method Man page
clean Man page Source code
clean.collunits Man page Source code
clean.datasets Man page Source code
clean.sites Man page Source code
cleanNULL Source code
collunit-class Man page
collunits Man page
collunits,site-method Man page
collunits,sites-method Man page
collunits-class Man page
collunits_classes Man page
contact-class Man page
contacts-class Man page
contacts_classes Man page
coordinates Man page
coordinates,sites-method Man page
dataset-class Man page
datasets Man page
datasets,collunit-method Man page
datasets,collunits-method Man page
datasets,site-method Man page
datasets,sites-method Man page
datasets-class Man page
doi Man page
doi,publication-method Man page
doi,site-method Man page
doi,sites-method Man page
filter Man page Source code
filter.NULL Man page Source code
filter.data.frame Man page
filter.sites Man page Source code
get_contacts Man page Source code
get_contacts.default Man page Source code
get_contacts.numeric Man page Source code
get_datasets Man page Source code
get_datasets.NULL Man page Source code
get_datasets.default Man page Source code
get_datasets.numeric Man page Source code
get_datasets.site Man page Source code
get_datasets.sites Man page Source code
get_documentation Man page Source code
get_downloads Man page Source code
get_downloads.NULL Man page Source code
get_downloads.numeric Man page Source code
get_downloads.sites Man page Source code
get_manual Man page Source code
get_params Man page Source code
get_publications Man page Source code
get_publications.default Man page Source code
get_publications.numeric Man page
get_publications.publication Man page
get_publications.publications Man page
get_publications.sites Man page
get_sites Man page Source code
get_sites.NULL Man page Source code
get_sites.default Man page Source code
get_sites.numeric Man page Source code
get_speleothems Man page Source code
get_speleothems.numeric Man page Source code
get_speleothems.sites Man page Source code
get_stats Man page Source code
get_table Man page Source code
get_taxa Man page Source code
get_taxa.default Man page Source code
get_taxa.numeric Man page Source code
get_taxon Man page Source code
get_taxon.default Man page Source code
get_taxon.numeric Man page Source code
getids Man page Source code
getids.collunit Man page Source code
getids.collunits Man page Source code
getids.site Man page Source code
getids.sites Man page Source code
group_dataset Source code
group_download Source code
group_response Source code
length Man page
length,chronologies-method Man page
length,collunits-method Man page
length,contacts-method Man page
length,datasets-method Man page
length,publications-method Man page
length,samples-method Man page
length,sites-method Man page
length,speleothems-method Man page
length,taxa-method Man page
missingOrNULL-class Man page
names Man page
names,collunit-method Man page
names,contact-method Man page
names,dataset-method Man page
names,publication-method Man page
names,publications-method Man page
names,site-method Man page
names,sites-method Man page
names,speleothem-method Man page
names,taxon-method Man page
normalize_agerange Source code
parseLocation Source code
parseURL Source code
parse_site Source code
parse_speleothem Source code
parse_taxon Source code
pingNeotoma Man page Source code
plot Man page
plot,site-method Man page
plot,sites-method Man page
plotLeaflet Man page
plotLeaflet,ANY-method Man page
plotLeaflet,site-method Man page
plotLeaflet,sites-method Man page
pubAuthors Source code
publication-class Man page
publications-class Man page
publications_classes Man page
repositories-class Man page
repositories_classes Man page
repository-class Man page
sample-class Man page
samples Man page
samples,collunit-method Man page
samples,collunits-method Man page
samples,site-method Man page
samples,sites-method Man page
samples-class Man page
samples_classes Man page
set_chronology Man page Source code
set_collunit Man page Source code
set_contact Man page Source code
set_dataset Man page Source code
set_default Man page
set_default,chronologies-method Man page
set_publication Man page Source code
set_sample Man page Source code
set_server Man page Source code
set_site Man page Source code
set_speleothem Man page Source code
show Man page
show,collunit-method Man page
show,collunits-method Man page
show,contact-method Man page
show,contacts-method Man page
show,dataset-method Man page
show,datasets-method Man page
show,publication-method Man page
show,publications-method Man page
show,site-method Man page
show,sites-method Man page
show,speleothem-method Man page
show,speleothems-method Man page
show,taxa-method Man page
show,taxon-method Man page
site-class Man page
sites-class Man page
sites_classes Man page
specimen-class Man page
specimens-class Man page
specimens_classes Man page
speleo_helper Source code
speleothem-class Man page
speleothemdetails Man page
speleothemdetails,collunit-method Man page
speleothemdetails,collunits-method Man page
speleothemdetails,site-method Man page
speleothemdetails,sites-method Man page
speleothems Man page
speleothems,collunit-method Man page
speleothems,collunits-method Man page
speleothems,site-method Man page
speleothems,sites-method Man page
speleothems-class Man page
speleothems_classes Man page
sub,collunits-method Man page
sub,datasets-method Man page
sub,speleothems-method Man page
sub,taxa-method Man page
sub-sub Man page
sub-sub,collunits-method Man page
sub-sub,contacts-method Man page
sub-sub,datasets-method Man page
sub-sub,publications-method Man page
sub-sub,samples-method Man page
sub-sub,speleothems-method Man page
sub-sub,taxa-method Man page
sub-subset Man page
sub-subset,collunits-method Man page
sub-subset,datasets-method Man page
sub-subset,publications-method Man page
sub-subset,samples-method Man page
sub-subset,speleothems-method Man page
sub-subset,taxa-method Man page
subset Man page
subset,collunit-method Man page
subset,dataset-method Man page
subset,sample-method Man page
subset,speleothem-method Man page
subset,taxon-method Man page
summary,sites-method Man page
taxa Man page
taxa,collunit-method Man page
taxa,collunits-method Man page
taxa,site-method Man page
taxa,sites-method Man page
taxa-class Man page
taxa_classes Man page
taxon-class Man page
testNull Source code
toWide Man page Source code
use_na Source code
neotoma2 documentation built on Dec. 6, 2025, 5:07 p.m.