|bic.netEst.undir||Bayesian information criterion to select the tuning...|
|breastcancer2012||Breast cancer data from TCGA (2012).|
|edgelist||A data frame of edges, each row corresponding to one edge|
|g||A directed acyclic graph corresponding to the Adrenergic...|
|group||The vector of class indicators|
|netEst.dir||Constrained estimation of directed networks|
|netEst.undir||Constrained estimation of undirected networks|
|NetGSA||Network-based Gene Set Analysis|
|netgsa-package||Network-Based Gene Set Analysis|
|nonedgelist||A data frame of nonedges, each row corresponding to one...|
|pathways||A list of KEGG pathways|
|prepareAdjacencyMatrix||Construct adjacency matrices from existing databases or user...|
|preparePathways||Prepare pathway dataset needed by NetGSA|
|x||Data matrix p by n|
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