Network-Based Gene Set Analysis

bic.netEst.undir | Bayesian information criterion to select the tuning... |

breastcancer2012 | Breast cancer data from TCGA (2012). |

edgelist | A data frame of edges, each row corresponding to one edge |

g | A directed acyclic graph corresponding to the Adrenergic... |

group | The vector of class indicators |

netEst.dir | Constrained estimation of directed networks |

netEst.undir | Constrained estimation of undirected networks |

NetGSA | Network-based Gene Set Analysis |

netgsa-package | Network-Based Gene Set Analysis |

nonedgelist | A data frame of nonedges, each row corresponding to one... |

pathways | A list of KEGG pathways |

prepareAdjacencyMatrix | Construct adjacency matrices from existing databases or user... |

preparePathways | Prepare pathway dataset needed by NetGSA |

x | Data matrix p by n |

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