netgsa-package: Network-Based Gene Set Analysis

Description Details Author(s) References See Also

Description

The netgsa-package provides functions for carrying out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.

Details

Package: netgsa
Type: Package
Version: 3.0
Date: 2016-05-11
License: GPL (>=2)

Author(s)

Ali Shojaie <[email protected]> and Jing Ma <[email protected]>

References

Ma, J., Shojaie, A. & Michailidis, G. (2014). Network-based pathway enrichment analysis with incomplete network information, submitted. http://arxiv.org/abs/1411.7919.

Shojaie, A., & Michailidis, G. (2010a). Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs. Biometrika 97(3), 519-538. http://biomet.oxfordjournals.org/content/97/3/519.short

Shojaie, A., & Michailidis, G. (2010b). Network enrichment analysis in complex experiments. Statistical applications in genetics and molecular biology, 9(1), Article 22. http://www.ncbi.nlm.nih.gov/pubmed/20597848.

Shojaie, A., & Michailidis, G. (2009). Analysis of gene sets based on the underlying regulatory network. Journal of Computational Biology, 16(3), 407-426. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3131840/

See Also

glasso, glmnet


netgsa documentation built on May 30, 2017, 1:47 a.m.