netgsa-package: Network-Based Gene Set Analysis

Description Details Author(s) References See Also


The netgsa-package provides functions for carrying out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.


Package: netgsa
Type: Package
Version: 3.0
Date: 2016-05-11
License: GPL (>=2)


Ali Shojaie <[email protected]> and Jing Ma <[email protected]>


Ma, J., Shojaie, A. & Michailidis, G. (2014). Network-based pathway enrichment analysis with incomplete network information, submitted.

Shojaie, A., & Michailidis, G. (2010a). Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs. Biometrika 97(3), 519-538.

Shojaie, A., & Michailidis, G. (2010b). Network enrichment analysis in complex experiments. Statistical applications in genetics and molecular biology, 9(1), Article 22.

Shojaie, A., & Michailidis, G. (2009). Analysis of gene sets based on the underlying regulatory network. Journal of Computational Biology, 16(3), 407-426.

See Also

glasso, glmnet

netgsa documentation built on May 30, 2017, 1:47 a.m.