breastcancer2012_subset: Breast cancer data from TCGA (2012). This is a 750 gene...

In netgsa: Network-Based Gene Set Analysis

Breast cancer data from TCGA (2012). This is a 750 gene subset

Description

An example data set consisting of RNA-seq gene expression data, KEGG pathways, edge list and non-edge list.

Usage

data(breastcancer2012_subset)

Format

A list with components

x

The p \times n data matrix.

group

The vector of class indicators of length n.

pathways

A list of KEGG pathways.

edgelist

A data frame of edges, each row corresponding to one edge.

nonedgelist

A data frame of nonedges, each row corresponding to one negative edge.

pathways_mat

Matrix with pathway indicators

References

Cancer Genome Atlas Network. (2012). Comprehensive molecular portraits of human breast tumours. Nature, 490(7418), 61.

Examples

data("breastcancer2012_subset")

netgsa documentation built on Nov. 14, 2023, 5:09 p.m.