Man pages for netmhc2pan
Interface to 'NetMHCIIpan'
| capitalize_first_char | Convert the first character to upper case. |
| check_alleles | Check the allele names |
| check_can_create_file | Check that a file can be created at a certain path. |
| check_fasta_file_sequence_lengths | Check the lengths of the sequences in a FASTA file |
| check_netmhc2pan_bin_url | Check the URL of the NetMHCIIpan binary tarball |
| check_netmhc2pan_data_url | Check the URL of the NetMHCIIpan binary tarball |
| check_netmhc2pan_installation | Checks the installation of NetMHCIIpan. |
| create_temp_fasta_filename | Create a '.fasta' file |
| create_temp_xls_filename | Create a '.xls' file |
| default_params_doc | This function does nothing. It is intended to inherit is... |
| download_netmhc2pan_bin | Download the NetMHCIIpan binary |
| get_default_netmhc2pan_bin_path | Get the full path to the default NetMHC2pan binary |
| get_default_netmhc2pan_bin_tarfile_path | Get the default path for the NetMHCIIpan binary tarball file |
| get_default_netmhc2pan_folder | Get the path to the folder where this package installs... |
| get_default_netmhc2pan_subfolder | Get the full path to the NetMHC2pan sub-folder |
| get_default_netmhc2pan_version | Get the default NetMHC2pan version used |
| get_netmhc2pan_alleles | Get a list of the alleles supported by NetMHCIIpan |
| get_netmhc2pan_archive_filename | Get the filename of the NetMHC2pan archive file |
| get_netmhc2pan_bin_url | Get the NetMHCIIpan binary download URL. |
| get_netmhc2pan_data_url | Get the NetMHCIIpan data tarball URL. |
| get_netmhc2pan_url | Deprecated, use get_netmhc2pan_bin_url instead |
| install_netmhc2pan | Install NetMHCIIpan |
| install_netmhc2pan_bin | Install the NetMHCIIpan binary to a local folder |
| install_netmhc2pan_bin_from_file | Install the NetMHCIIpan binary to a local folder |
| install_netmhc2pan_data | Install the NetMHCIIpan data to a local folder |
| install_netmhc2pan_data_from_file | Install the NetMHCIIpan data from file |
| install_netmhc2pan_from_files | Install NetMHCIIpan from files. |
| is_netmhc2pan_bin_installed | Measure if NetMHCIIpan binary is installed locally |
| is_netmhc2pan_data_installed | Measure if NetMHCIIpan data folder is installed locally |
| is_netmhc2pan_haplotype | Is the haplotype valid? |
| is_netmhc2pan_installed | Measure if NetMHCIIpan is installed locally |
| is_netmhc2pan_set_up | Measure if NetMHCIIpan is set up |
| is_on_appveyor | Determines if the environment is AppVeyor |
| is_on_ci | Determines if the environment is a continuous integration... |
| is_on_github_actions | Determines if the environment is GitHub Actions |
| is_on_travis | Determines if the environment is Travis CI |
| is_tcsh_installed | See if tcsh is installed |
| is_url_valid | Is the download URL valid? |
| netmhc2pan | netmhc2pan: predict peptide binding strengths using... |
| netmhc2pan_report | Show a 'netmhc2pan' report using message, to be used when... |
| netmhc2pan_self_test | Test NetMHCIIpan by doing a minimal run. |
| predict_ic50 | Predict the IC50 for peptides. |
| predict_ic50s | Predict the IC50s from a sequence |
| read_netmhc2pan_xls_output | Read MHC2pan output |
| run_netmhc2pan | Run NetMHCIIpan |
| set_up_netmhc2pan | Install the NetMHCIIpan binary to a local folder |
| to_netmhc2pan_name | Convert a formal haplotype name to its NetMHC2pan notation |
| uninstall_netmhc2pan | Uninstall NetMHCIIpan |
