install_netmhc2pan: Install NetMHCIIpan
In netmhc2pan: Interface to 'NetMHCIIpan'

install_netmhc2pan

R Documentation

Install NetMHCIIpan

Description

Install NetMHCIIpan to a local folder, by downloading the binary and data files. Use install_netmhc2pan_from_files to install NetMHCIIpan from files that are already downloaded.

Usage

install_netmhc2pan(
  netmhc2pan_bin_url = get_netmhc2pan_bin_url(),
  netmhc2pan_data_url = get_netmhc2pan_data_url(),
  verbose = FALSE,
  netmhc2pan_archive_filename = get_netmhc2pan_archive_filename(),
  netmhc2pan_folder_name = get_default_netmhc2pan_folder(),
  temp_local_file = tempfile(pattern = "netmhc2pan_install_netmhc2pan_")
)

Arguments

`netmhc2pan_bin_url`	URL to download the NetMHCIIpan binary tarball file from, similar to, for example, `https://www.cbs.dtu.dk/download/12345678-1234-1234-1234-123456789ABC`. Use get_netmhc2pan_bin_url to get the default URL.
`netmhc2pan_data_url`	URL to download the NetMHCIIpan data tarball file from, similar to, for example, https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/data.Linux.tar.gz. Use get_netmhc2pan_data_url to get the default URL.
`verbose`	set to TRUE for more output
`netmhc2pan_archive_filename`	the NetMHC2pan archive filename, for example `netMHCIIpan-3.2.Linux.tar.gz`, which is used in installation of NetMHC2pan. Use get_netmhc2pan_archive_filename to get this filename.
`netmhc2pan_folder_name`	the folder (to be) used by NetMHCIIpan. From this location, a subfolder for NetMHCIIpan is created. Use get_default_netmhc2pan_folder to see the location of the default NetMHCIIpan folder. Use get_default_netmhc2pan_subfolder to see the location of the default NetMHCIIpan subfolder.
`temp_local_file`	path to the temporary file to store the URL to. This file will be deleted afterwards.