dendroNetwork: Create hierarchical cluster network diagrams.

In networkD3: D3 JavaScript Network Graphs from R

Description

Create hierarchical cluster network diagrams.

Usage

dendroNetwork(hc, height = 500, width = 800, fontSize = 10,
  linkColour = "#ccc", nodeColour = "#fff", nodeStroke = "steelblue",
  textColour = "#111", textOpacity = 0.9, textRotate = NULL,
  opacity = 0.9, margins = NULL, linkType = c("elbow", "diagonal"),
  treeOrientation = c("horizontal", "vertical"), zoom = FALSE)

Arguments

hc	a hierarchical (hclust) cluster object.
height	height for the network graph's frame area in pixels
width	numeric width for the network graph's frame area in pixels
fontSize	numeric font size in pixels for the node text labels.
linkColour	character string specifying the colour you want the link lines to be. Multiple formats supported (e.g. hexadecimal).
nodeColour	character string specifying the colour you want the node circles to be. Multiple formats supported (e.g. hexadecimal).
nodeStroke	character string specifying the colour you want the node perimeter to be. Multiple formats supported (e.g. hexadecimal).
textColour	character vector or scalar specifying the colour you want the text to be before they are clicked. Order should match the order of hclust$labels. Multiple formats supported (e.g. hexadecimal).
textOpacity	numeric vector or scalar of the proportion opaque you would like the text to be before they are clicked. rder should match the order of hclust$labels.
textRotate	numeric degress to rotate text for node text. Default is 0 for horizontal and 65 degrees for vertical.
opacity	numeric value of the proportion opaque you would like the graph elements to be.
margins	numeric value or named list of plot margins (top, right, bottom, left). Set the margin appropriately to accomodate long text labels.
linkType	character specifying the link type between points. Options are 'elbow' and 'diagonal'.
treeOrientation	character specifying the tree orientation, Options are 'vertical' and 'horizontal'.
zoom	logical enabling plot zoom and pan

Source

Mike Bostock: http://bl.ocks.org/mbostock/4063570.

Fabio Nelli: http://www.meccanismocomplesso.org/en/dendrogramma-d3-parte1/

Examples

## Not run: 
hc <- hclust(dist(USArrests), "ave")

dendroNetwork(hc, height = 600)
dendroNetwork(hc, treeOrientation = "vertical")

dendroNetwork(hc, height = 600, linkType = "diagonal")
dendroNetwork(hc, treeOrientation = "vertical", linkType = "diagonal")

dendroNetwork(hc, textColour = c("red", "green", "orange")[cutree(hc, 3)],
               height = 600)
dendroNetwork(hc, textColour = c("red", "green", "orange")[cutree(hc, 3)],
               treeOrientation = "vertical")

## End(Not run)

networkD3 documentation built on May 2, 2019, 2:37 a.m.